org.utgenome.gwt.utgb.client.bio
Interface OnGenomeDataVisitor

All Known Implementing Classes:
InfoSilkGenerator, IntervalLayout.IntervalRetriever, OnGenomeDataVisitorBase

public interface OnGenomeDataVisitor

Visitor interface for traversing data mapped onto a genome sequence

Author:
leo

Method Summary
 void visitBEDGene(BEDGene g)
           
 void visitDefault(OnGenome g)
           
 void visitGap(Gap p)
           
 void visitGene(Gene g)
           
 void visitGraph(GraphData graph)
           
 void visitInterval(Interval interval)
           
 void visitRead(Read r)
           
 void visitReadCoverage(ReadCoverage readCoverage)
           
 void visitReadList(ReadList readList)
           
 void visitSAMRead(SAMRead r)
           
 void visitSAMReadLight(SAMReadLight r)
           
 void visitSAMReadPair(SAMReadPair pair)
           
 void visitSAMReadPairFragment(SAMReadPairFragment fragment)
           
 void visitSequence(ReferenceSequence referenceSequence)
           
 

Method Detail

visitDefault

void visitDefault(OnGenome g)

visitInterval

void visitInterval(Interval interval)

visitRead

void visitRead(Read r)

visitGap

void visitGap(Gap p)

visitGene

void visitGene(Gene g)

visitBEDGene

void visitBEDGene(BEDGene g)

visitSAMRead

void visitSAMRead(SAMRead r)

visitSAMReadLight

void visitSAMReadLight(SAMReadLight r)

visitSAMReadPair

void visitSAMReadPair(SAMReadPair pair)

visitSAMReadPairFragment

void visitSAMReadPairFragment(SAMReadPairFragment fragment)

visitSequence

void visitSequence(ReferenceSequence referenceSequence)

visitReadCoverage

void visitReadCoverage(ReadCoverage readCoverage)

visitGraph

void visitGraph(GraphData graph)

visitReadList

void visitReadList(ReadList readList)


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