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See:
Description
| Interface Summary | |
|---|---|
| CompactFASTA.PacFileAccess | |
| GenomeSequence | A common interface of genome sequences |
| OverlappingKmerIterator | For walking overlapping k-mer integers |
| Class Summary | |
|---|---|
| CompactACGT | Compact array for ACGT (and N) sequences |
| CompactACGTWriter | ACGT sequence compressor |
| CompactFASTA | CompactFASTA is a packed FASTA file, supporting random accesses to sub sequences of a specified chromosome. |
| CompactFASTAGenerator | |
| CompactFASTAIndex | A sequence index to packed FASTA files |
| FASTA | |
| FASTA.RawStringWrapper | |
| FASTADatabase | Fasta2DB creates a SQLite database file from a given FASTA format file |
| FASTADatabase.Config | |
| FASTADatabase.NSeq | A holder for retrieving compressed genome sequence |
| FASTADatabase.TextOutput | |
| FASTAPullParser | A pull parser for FASTA format files |
| FASTASequence | A FASTASequence represents an entry in FASTA files |
| Kmer | K-mer integer representation of ACGT. |
FASTA utilities
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