Uses of Class
org.utgenome.gwt.utgb.client.bio.SAMReadLight

Packages that use SAMReadLight

org.utgenome.format.sam
org.utgenome.graphics	Graphics drawing classes
org.utgenome.gwt.utgb.client.bio	Biological data objects for Google Web Toolkit RPC (Remote Procedure Call).
org.utgenome.gwt.utgb.client.canvas	Browser-side graphic drawing libraries using HTML canvas (or VML in IE).

Uses of SAMReadLight in org.utgenome.format.sam

Methods in org.utgenome.format.sam that return SAMReadLight

static SAMReadLight	SAM2SilkReader.convertToSAMReadLight(net.sf.samtools.SAMRecord record) convert a SAMRecord into a SAMRead, which can be used in GWT code.
SAMReadLight	SAMReader.SAMReadFactory.newSAMRead(net.sf.samtools.SAMRecord r)
SAMReadLight	SAMReader.CompleteSAMReadFactory.newSAMRead(net.sf.samtools.SAMRecord r)
SAMReadLight	SAMReader.LightWeightSAMReadFactory.newSAMRead(net.sf.samtools.SAMRecord r)

Uses of SAMReadLight in org.utgenome.graphics

Methods in org.utgenome.graphics with parameters of type SAMReadLight

void	ReadCanvas.drawSAMRead(SAMReadLight r, int y)

Uses of SAMReadLight in org.utgenome.gwt.utgb.client.bio

Subclasses of SAMReadLight in org.utgenome.gwt.utgb.client.bio

class

SAMRead Genome Read data

Fields in org.utgenome.gwt.utgb.client.bio declared as SAMReadLight

SAMReadLight

SAMReadPairFragment.oneEnd

Methods in org.utgenome.gwt.utgb.client.bio that return SAMReadLight

SAMReadLight	SAMReadPair.getFirst()
SAMReadLight	SAMReadPair.getSecond()

Methods in org.utgenome.gwt.utgb.client.bio with parameters of type SAMReadLight

boolean	SAMReadLight.isMate(SAMReadLight other)
boolean	SAMReadLight.unclippedSequenceHasOverlapWith(SAMReadLight other)
void	GenomeRangeVisitorBase.visitSAMReadLight(SAMReadLight r)
void	GenomeRangeVisitor.visitSAMReadLight(SAMReadLight r)
void	InfoSilkGenerator.visitSAMReadLight(SAMReadLight r)

Constructors in org.utgenome.gwt.utgb.client.bio with parameters of type SAMReadLight

SAMReadPair(SAMReadLight first, SAMReadLight second)

SAMReadPairFragment(SAMReadLight oneEnd, int mateStart)

Uses of SAMReadLight in org.utgenome.gwt.utgb.client.canvas

Methods in org.utgenome.gwt.utgb.client.canvas with parameters of type SAMReadLight

com.google.gwt.widgetideas.graphics.client.Color	ReadDisplayStyle.getSAMReadColor(SAMReadLight r)
void	IntervalLayout.IntervalRetriever.visitSAMReadLight(SAMReadLight r)