Uses of Class
org.utgenome.gwt.utgb.client.bio.GenomeDB

Packages that use GenomeDB

org.utgenome.gwt.utgb.client	UTGB Browser interface & track implementations.
org.utgenome.gwt.utgb.client.bio	Biological data objects for Google Web Toolkit RPC (Remote Procedure Call).
org.utgenome.gwt.utgb.client.track.lib	Standard track library for UTGB browser.
org.utgenome.gwt.utgb.server	UTGB's server-side libraries for supporting web request handling, managing database connections, initialization of UTGB web applications, etc.
org.utgenome.gwt.utgb.server.app	Contains sample codes of web actions.

Uses of GenomeDB in org.utgenome.gwt.utgb.client

Methods in org.utgenome.gwt.utgb.client with parameters of type GenomeDB

List<GenomeRange>	BrowserService.getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config) Get read data from the specified DB and location
void	BrowserServiceAsync.getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config, com.google.gwt.user.client.rpc.AsyncCallback<List<GenomeRange>> callback)

Uses of GenomeDB in org.utgenome.gwt.utgb.client.bio

Subclasses of GenomeDB in org.utgenome.gwt.utgb.client.bio

class

DASLocation DAS information

Methods in org.utgenome.gwt.utgb.client.bio with parameters of type GenomeDB

static GenomeDB.DBType

GenomeDB.resolveDBType(GenomeDB db) Resolve the db type when the db type is AUTO.

Constructors in org.utgenome.gwt.utgb.client.bio with parameters of type GenomeDB

DASLocation(GenomeDB base, String dasType)

GenomeDB(GenomeDB db)

Uses of GenomeDB in org.utgenome.gwt.utgb.client.track.lib

Methods in org.utgenome.gwt.utgb.client.track.lib that return GenomeDB

GenomeDB	DASTrack.getGenomeDB()
GenomeDB	ReadTrack.getGenomeDB() Override this method to extend db info parameters

Uses of GenomeDB in org.utgenome.gwt.utgb.server

Methods in org.utgenome.gwt.utgb.server with parameters of type GenomeDB

List<GenomeRange>

BrowserServiceImpl.getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config)

Uses of GenomeDB in org.utgenome.gwt.utgb.server.app

Methods in org.utgenome.gwt.utgb.server.app with parameters of type GenomeDB

static List<GenomeRange>	ReadView.overlapQuery(File baseDir, GenomeDB db, ChrLoc loc, ReadQueryConfig config)
static List<GenomeRange>	ReadView.overlapQuery(GenomeDB db, ChrLoc loc, ReadQueryConfig config)