Uses of Interface
org.utgenome.gwt.utgb.client.track.Track

Packages that use Track

org.utgenome.gwt.utgb.client.track
org.utgenome.gwt.utgb.client.track.lib	Standard track library for UTGB browser.
org.utgenome.gwt.utgb.client.track.lib.debug	Tracks for debug purpose
org.utgenome.gwt.utgb.client.track.lib.old	Old UTGB track library.
org.utgenome.gwt.utgb.client.track.operation

Uses of Track in org.utgenome.gwt.utgb.client.track

Classes in org.utgenome.gwt.utgb.client.track that implement Track

class

TrackBase TrackBase is a base class that supports to implement your own Tracks.

Fields in org.utgenome.gwt.utgb.client.track with type parameters of type Track

protected ArrayList<Track>

TrackGroup._trackList

Methods in org.utgenome.gwt.utgb.client.track that return Track

Track	TrackFrame.getTrack()
abstract Track	Track.TrackFactory.newInstance() obtain a new factory instance.

Methods in org.utgenome.gwt.utgb.client.track that return types with arguments of type Track

List<Track>	TrackGroup.getAllTrackList() Get the list of tracks containd in this group, including tracks within the sub groups.
List<Track>	TrackGroup.getTrackList() Get the list of tracks containd in this group, excluding tracks within the sub groups.

Methods in org.utgenome.gwt.utgb.client.track with parameters of type Track

void	TrackGroup.addTrack(Track track) Add a new track to this group.
int	TrackLayoutManager.getTrackIndex(Track track) Return the index of the given track
int	TrackQueue.getTrackIndex(Track track)
int	TrackGroup.getTrackIndex(Track track) Return the index of the given track in the group.
void	TrackConfig.init(Track track)
void	TrackGroup.insertTrack(Track track, int beforeIndex) Insert a new track before the specified index
void	TrackUpdateListener.onInsertTrack(Track track) When a new track is inserted to the group
void	TrackUpdateListenerAdapter.onInsertTrack(Track track)
void	TrackQueue.onInsertTrack(Track track)
void	TrackUpdateListener.onInsertTrack(Track track, int beforeIndex) When a new track is inserted to the group
void	TrackUpdateListenerAdapter.onInsertTrack(Track track, int beforeIndex)
void	TrackQueue.onInsertTrack(Track track, int beforeIndex)
void	TrackUpdateListener.onRemoveTrack(Track track) When the track is removed from the group
void	TrackUpdateListenerAdapter.onRemoveTrack(Track track)
void	TrackQueue.onRemoveTrack(Track track)
void	TrackGroup.removeTrack(Track track) Remove the specified track from this group.

Constructors in org.utgenome.gwt.utgb.client.track with parameters of type Track

TrackConfig(Track track)

TrackFrame(Track track, int width)

TrackFrame(Track track, int width, int height)

Uses of Track in org.utgenome.gwt.utgb.client.track.lib

Classes in org.utgenome.gwt.utgb.client.track.lib that implement Track

class	BEDTrack Deprecated. Use ReadTrack instead
class	ChromosomeMapTrack ChromosomeMapTrack is for visualizing Chromosome Map.
class	CSEGTrack Track for displaying read data in SEG format.
class	DASTrack DASTrack is for visualizing data that can be located on das data.
class	DBSelectTrack
class	GenomeTrack GenomeTrack for visualizing data on genome sequences using an image URL or an HTML page embedded in IFRAME tag.
class	GenomeTrackTextTest GenomeTrack is for visualizing data that can be located on genome sequences.
class	KeywordSearchTrack Keyword Search using utgb-keyword service
class	MiniBrowserTrack Track for embedding HTML page via iframe tag.
class	NavigatorTrack Navigator of the UTGB
class	ParameterTrack
class	ReadTrack Track for displaying read data in BED,SAM,BAM formats.
class	RefSeqTrack Reference sequence track
class	RibbonRulerTrack Track for displaying ribbon coordinates
class	RulerTrack RulerTrack
class	SAMQueryTrack Track for displaying SAM/BAM query result
class	SAMTrack Track for displaying SAM information
class	ScaleBarTrack Scale bar
class	ScrollButtonTrack ScrollButtonTrack has several move buttons that relocate a TrackWindow.
class	SequenceRulerTrack SequenceRulerTrack is a ruler on an entire sequence (a chromosome or scaffold).
class	ToolBoxTrack ToolBoxTrack has a list of Tracks.
class	TrackGenTrack
class	TrackTreeTrack
class	ValueSelectorTrack ValueSelectorTrack displays a set of text values.
class	ViewLoaderTrack Track for loading view files in Silk format.
class	WIGGraphCanvasTrack WIG Track for displaying graph data, including bar chart, heat map, etc.
class	WIGTrack WIG data track
class	WindowControlTrack Track window control buttons

Methods in org.utgenome.gwt.utgb.client.track.lib with parameters of type Track

void	TrackTreeTrack.onInsertTrack(Track track)
void	TrackTreeTrack.onInsertTrack(Track track, int beforeIndex)
void	TrackTreeTrack.onRemoveTrack(Track track)

Uses of Track in org.utgenome.gwt.utgb.client.track.lib.debug

Classes in org.utgenome.gwt.utgb.client.track.lib.debug that implement Track

class	DebugToolBoxTrack A tool box for debug purpose tracks
class	PropertyEditTrack A track for editing TrackGroupProperty
class	URLQueryArgumentTrack

Uses of Track in org.utgenome.gwt.utgb.client.track.lib.old

Classes in org.utgenome.gwt.utgb.client.track.lib.old that implement Track

class	OldUTGBAddTrackTrack
class	OldUTGBPropertyTrack
class	OldUTGBRulerTrack
class	OldUTGBTrack
class	OperationTrack

Methods in org.utgenome.gwt.utgb.client.track.lib.old with parameters of type Track

void	OldUTGBFrameCommandImpl.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameMoveRelCommand.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameMoveAbsCommand.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameZoomAbsCommand.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameRevCommand.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameParameterSetCommand.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameSetStartCommand.execute(Track track)
void	OldUTGBFrameCommandImpl.FrameSetEndCommand.execute(Track track)
void	OldUTGBOperationParser.parse(com.google.gwt.xml.client.Document document, com.google.gwt.user.client.ui.AbsolutePanel panel, Track track)
protected FrameCommand	OldUTGBOperationParser.parseCommandNode(com.google.gwt.xml.client.Node commandNode, Track track)
protected MenuOperationItem	OldUTGBOperationParser.parseMenuItemNode(com.google.gwt.xml.client.Node menuItemNode, Track track)
Operation	OldUTGBOperationParser.parseOperationNode(com.google.gwt.xml.client.Node operationNode, Track track)

Constructors in org.utgenome.gwt.utgb.client.track.lib.old with parameters of type Track

OldUTGBSubOperationImpl(com.google.gwt.xml.client.Node subOperationNode, Track track)

Uses of Track in org.utgenome.gwt.utgb.client.track.operation

Fields in org.utgenome.gwt.utgb.client.track.operation declared as Track

protected Track

OperationImpl.track

Methods in org.utgenome.gwt.utgb.client.track.operation that return Track

protected Track

OperationImpl.getTrack()

Methods in org.utgenome.gwt.utgb.client.track.operation with parameters of type Track

void	FrameCommand.execute(Track track)
void	FrameCommandImpl.execute(Track track)
abstract void	OperationParser.parse(com.google.gwt.xml.client.Document document, com.google.gwt.user.client.ui.AbsolutePanel panel, Track track)
void	OperationParser.parse(String operationXMLStr, com.google.gwt.user.client.ui.AbsolutePanel panel, Track track)
protected abstract FrameCommand	OperationParser.parseCommandNode(com.google.gwt.xml.client.Node commandNode, Track track)
protected abstract MenuOperationItem	OperationParser.parseMenuItemNode(com.google.gwt.xml.client.Node menuItemNode, Track track)
abstract Operation	OperationParser.parseOperationNode(com.google.gwt.xml.client.Node operationNode, Track track)
protected void	OperationImpl.setTrack(Track track)

Constructors in org.utgenome.gwt.utgb.client.track.operation with parameters of type Track

FrameOperation(com.google.gwt.xml.client.Node frameOperationNode, Track track)

OperationImpl(Track track)

SubOperation(com.google.gwt.xml.client.Node subOperationNode, Track track)