Uses of Class
org.utgenome.gwt.utgb.client.bio.ReadQueryConfig

Packages that use ReadQueryConfig

org.utgenome.format.sam
org.utgenome.gwt.utgb.client	UTGB Browser interface & track implementations.
org.utgenome.gwt.utgb.server	UTGB's server-side libraries for supporting web request handling, managing database connections, initialization of UTGB web applications, etc.
org.utgenome.gwt.utgb.server.app	Contains sample codes of web actions.

Uses of ReadQueryConfig in org.utgenome.format.sam

Methods in org.utgenome.format.sam with parameters of type ReadQueryConfig

static List<GenomeRange>	SAMReader.depthCoverage(File bamFile, ChrLoc loc, int pixelWidth, ReadQueryConfig config)
static List<GenomeRange>	SAMReader.depthCoverageInWIG(File wigFile, ChrLoc loc, int pixelWidth, ReadQueryConfig config)
static List<GenomeRange>	SAMReader.overlapQuery(File bamFile, ChrLoc loc, int pixelWidth, ReadQueryConfig config) Retrieved SAMReads (or SAMReadPair) overlapped with the specified interval

Uses of ReadQueryConfig in org.utgenome.gwt.utgb.client

Methods in org.utgenome.gwt.utgb.client with parameters of type ReadQueryConfig

List<GenomeRange>	BrowserService.getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config) Get read data from the specified DB and location
void	BrowserServiceAsync.getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config, com.google.gwt.user.client.rpc.AsyncCallback<List<GenomeRange>> callback)

Uses of ReadQueryConfig in org.utgenome.gwt.utgb.server

Methods in org.utgenome.gwt.utgb.server with parameters of type ReadQueryConfig

List<GenomeRange>

BrowserServiceImpl.getOnGenomeData(GenomeDB db, ChrLoc range, ReadQueryConfig config)

Uses of ReadQueryConfig in org.utgenome.gwt.utgb.server.app

Methods in org.utgenome.gwt.utgb.server.app with parameters of type ReadQueryConfig

static List<GenomeRange>	ReadView.overlapQuery(File baseDir, GenomeDB db, ChrLoc loc, ReadQueryConfig config)
static List<GenomeRange>	ReadView.overlapQuery(GenomeDB db, ChrLoc loc, ReadQueryConfig config)