Uses of Class
org.utgenome.core.cui.UTGBCommandBase

Packages that use UTGBCommandBase

org.utgenome.core.cui	CUI commands.
org.utgenome.shell

Uses of UTGBCommandBase in org.utgenome.core.cui

Subclasses of UTGBCommandBase in org.utgenome.core.cui

class	Convert
class	DrawHistogram
class	ImportBustard
class	ReadStat
class	SAM2Silk
class	ScreenShot screenshot commant to take a image data of the read view
class	Snappy Snappy compresser/decompressor

Uses of UTGBCommandBase in org.utgenome.shell

Subclasses of UTGBCommandBase in org.utgenome.shell

class	AddAction A UTGBShell sub-command for adding new action class
class	Clean UTGB Shell Sub Command for cleaning target directory
class	Compile A UTGBShell sub command for compiling java source codes with Maven
class	Create Create sub command
class	Deploy
class	Eclipse A sub command to generate Eclipse project files
class	FastqRename
class	FastqToFasta fastq2fasta command
class	FastqToSAM
class	GWT A sub command for creating a GWT interface
class	GWTCompile
class	Illumina2Fastq
class	Import import command
class	Keyword keyword DB management tool
class	Maven Maven utility
class	Pack creating packed FASTA
class	QSeqToFastq
class	Repair
class	Sam2Wig
class	SAMToFastq
class	Sequence Retrieve the genome sequence from the pack file
class	Server A UTGB sub command for starting up a UTGB portable server
class	SVNAdd Sub-command to add the current project to the subversion repository
class	Upgrade
class	UTGBShellCommand A base implementation of the UTGBShell's sub commands
class	UTGBShellCommandBase