Hierarchy For Package org.utgenome.util.aligner

Package Hierarchies:

All Packages

Class Hierarchy

• java.lang.Object
  • org.utgenome.util.aligner.LArray (implements org.utgenome.util.aligner.RandomAccess)
  • org.utgenome.util.aligner.SmithWatermanAligner
  • org.utgenome.util.aligner.SmithWatermanAligner.Alignment
  • org.utgenome.util.aligner.SmithWatermanAligner.Config
  • org.utgenome.util.aligner.SmithWatermanAligner.StringWrapper (implements org.utgenome.format.fasta.GenomeSequence)
  • org.utgenome.util.aligner.SuffixArrayBuilder
  • org.utgenome.util.aligner.SuffixArrayBuilder.StringWrapper (implements org.utgenome.util.aligner.RandomAccess)
  • org.utgenome.util.aligner.SuffixArrayBuilder.SubArray (implements org.utgenome.util.aligner.RandomAccess)
  • org.utgenome.util.aligner.UInt32 (implements java.lang.Comparable<T>)

Interface Hierarchy

• org.utgenome.util.aligner.RandomAccess