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| Interface Summary | |
|---|---|
| RandomAccess | interface for accessing an array of integers |
| Class Summary | |
|---|---|
| LArray | Array capable to store more than 2G (2 x 1024 x 1024 x 1024) entries |
| SmithWatermanAligner | Simple Smith-Waterman based aligner |
| SmithWatermanAligner.Alignment | |
| SmithWatermanAligner.Config | |
| SmithWatermanAligner.StringWrapper | |
| SuffixArrayBuilder | SA-IS implementation for building suffix arrays |
| SuffixArrayBuilder.StringWrapper | |
| SuffixArrayBuilder.SubArray | |
| UInt32 | Uint32 value |
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