All Classes

AbsoluteFocusPanel AcceptSpecies ACGT ACGTEncoder ActionInfo ActionPackage ActionPackageAlias AGPPullParser Alignment AlignmentResult AminoAcid Animation Assembly AXTAlignment AXTLens BarGraphCanvas BED2Silk BED2Silk.BEDHeaderAttribute BED2Silk.BEDHeaderDescription BED2SilkReader BEDDatabase BEDDatabase.BEDRangeQuery BEDDatabase.DBBuilder BEDEntry BEDGene BEDLexer BEDParser BEDParser.attribute_return BEDParser.attributeValue_return BEDParser.description_return BEDParser.descriptionName_return BEDQuery BEDTrack BEDTrack BEDViewer Blast2Silk Blast2Silk.Blast2SilkConverter Blast2Silk.BlastResult Blast2Silk.BlastResult.BlastAlignment Blast2Silk.BlastResult.BlastAlignment.Strand Blast2Silk.PeekableReader BlastResult BlockReader BlockwiseFileReader BooleanType Border BrowserInfo BrowserInfo.Agent BrowserService BrowserServiceAsync BrowserServiceImpl BSSRead BSSReadView BSSReadView.BSSAlignment CanonicalProperties CDS ChrLoc ChromosomeMap ChromosomeMap.Comparator4ChrName ChromosomeMap.CytoBandComprator ChromosomeMap.ReadLocus ChromosomeMapCanvas ChromosomeMapTrack ChromosomeWindow ChrRange CIGAR CIGAR.Element CIGAR.Type CodonTable ColorType ColorUtil CompactACGT CompactACGTWriter CompactFASTA CompactFASTA.PacFileAccess CompactFASTAGenerator CompactFASTAIndex CompactWIGData ConfigInputForm ConnectionInfo Content Coordinate Coordinate CytoBand DASDsn DASDsn.DSN DASDsn.DSNQuery DASDsn.DSNSource DASLocation DASResult DASResult.DASFeature DASResult.DASFeature.FeatureType DASResult.DASFeature.Group DASResult.DASFeature.Group.Link DASResult.DASFeature.Method DASResult.DASFeature.Target DASResult.DASGFF DASResult.Segment DASTrack DASViewer DatabaseCatalog DatabaseEntry DatabaseInfo DatabaseTable DataType DataTypeBase DBSelectTrack DebugToolBoxTrack DefaultRequestMap Design DisjointSet DispType DOMUtil DotPlot DoubleType DraggableTable DragListener DynamicForm EagyGeneLine EchoBackView EditableLabel EditableTable EGTXMLReader EGTXMLReader.Opt EnhancedGeneticVariation EnhancedGeneticVariation.MutationPosition EnhancedGeneticVariation.MutationType EventImpl Exon Exon FASTA FASTA.RawStringWrapper FASTADatabase FASTADatabase.Config FASTADatabase.NSeq FASTAPullParser FASTASequence FASTASequence FastqRead FastqReader FastqSplitReader FastqToBAM FastqToSilkReader FileBlock FixedWidthLabel FloatType FontMetric FontPanel FontPanel.FontInfo FormatConversionReader FormatConversionReader.PipeConsumer FormLabel Frame Frame FrameBorder FrameButtonListener FrameCommand FrameCommandImpl FrameOperation Gap Gene Gene GeneCanvas GeneticVariation GeneticVariation.VariationType GeneViewer GenomeCanvas GenomeCoordinate GenomeDB GenomeDB.DBType GenomeKeywordEntry GenomeKeywordEntry.KeywordAlias GenomeSequence GenomeTrack GenomeTrackTextTest GenomeWindow GETMethodURL GFF3Entry GFF3Reader GradationType GraphData GraphicUtil GraphScale GraphWindow GWTGenomeCanvas GWTGenomeCanvas.CoverageStyle GWTGenomeCanvas.DragPoint GWTGraphCanvas GWTGraphCanvas.GraphStyle GWTGraphCanvas.Indent HasTouchHandlers Hello HelloServlet HiddenParameter HorizontalBorder HorizontalTrackFrame HTMLContentFilter Icon Icon IconImage IconSetPanel ImageHandle ImageLoader ImageLoader.CallBack ImportStmt InfoSilkGenerator InputForm IntegerType Interval IntervalLayout IntervalLayout.IntervalRetriever IntervalLayout.LocusLayout IntervalTree IUPAC JDBCService JDBCService.GenericDBAccess JDBCService.HSQLDBAccess JSONUtil KeywordAliasReader KeywordDB KeywordSearch KeywordSearchResult KeywordSearchResult.Entry KeywordSearchTrack Kmer KmerIntegerFactory LArray Layer LegacyTrackInformation LinkOperation LoadView LocusClickHandler LowerBoundType MenuOperation MenuOperationItem Message MessageType MethylViewer MethylViewer.MethlEntry MiniBrowserTrack MouseClickEventImpl MouseMoveListener NavigatorTrack NodeListImpl NowLoadingIcon ObjectStreamReader ObjectStreamReader.TextFormatToObjectMapper OldDescriptionXML OldDescriptionXMLReader OldUTGBAddTrackTrack OldUTGBFrameCommandImpl OldUTGBFrameCommandImpl.FrameMoveAbsCommand OldUTGBFrameCommandImpl.FrameMoveRelCommand OldUTGBFrameCommandImpl.FrameParameterSetCommand OldUTGBFrameCommandImpl.FrameRevCommand OldUTGBFrameCommandImpl.FrameSetEndCommand OldUTGBFrameCommandImpl.FrameSetRevisionCommand OldUTGBFrameCommandImpl.FrameSetSpeciesCommand OldUTGBFrameCommandImpl.FrameSetStartCommand OldUTGBFrameCommandImpl.FrameSetTargetCommand OldUTGBFrameCommandImpl.FrameZoomAbsCommand OldUTGBOperationParser OldUTGBOptionAttribute OldUTGBProperty OldUTGBPropertyTrack OldUTGBRulerTrack OldUTGBSubOperationImpl OldUTGBTrack OldUTGBTrackGroup OldViewXML OldViewXML.GroupProperties OldViewXML.Prop OldViewXML.Track OldViewXML.TrackGroup OldViewXML.TrackWindow OnGenome OnGenomeDataSet OnGenomeDataVisitor OnGenomeDataVisitorBase Operation OperationArea OperationImpl OperationParser OperationParserImpl OperationTrack Option Optional OSInfo OverlappingKmerIterator Parameter Parameter ParameterMap ParameterTrack PasswordType PathElement PrioritySearchTree PrioritySearchTree.ResultHandler PrioritySearchTree.Visitor Properties PropertyEditTrack PSLLine PSLPullParser QSeqToFASTQ RandomAccess Range RangeSelectable Read Read Read.ReadType ReadCanvas ReadCanvas.DrawStyle ReadCoverage ReadDBBuilder ReadDBBuilder.ReferenceReader ReadDepth ReadDepth.DepthOutput ReadDisplayStyle ReadList ReadQueryConfig ReadQueryConfig.Layout ReadSweeper ReadSweeper.ReadSetHandler ReadTrack ReadView Reference ReferenceSequence RefSeqTrack Relation RepeatChainFinder RepeatChainFinder.FlippedInterval2D RepeatChainFinder.Interval2D RepeatChainFinder.IntervalCluster RequestDispatcher RequestHandler RequestHandlerBase RequestHandlerTable RequestMap RequestURI Result Ribbon Ribbon Ribbon.Crease Ribbon.CreaseType Ribbon.RibbonSegment Ribbon.RibbonSegment.SegmentType RibbonBrowser RibbonCanvas RibbonCanvas RibbonRuler RibbonRulerTrack RoundCircle RoundCornerFrame RPCServiceManager RulerTrack SAM2SilkReader Sam2WigConverter Sam2WigConverter.CoverageWriter Sam2WigConverter.SAMRecordCursor SAMCanvas SAMLens SAMQueryTrack SAMRead SAMReader SAMReader.CompleteSAMReadFactory SAMReader.LightWeightSAMReadFactory SAMReader.SAMReadFactory SAMReadFlag SAMReadIterator SAMReadLight SAMReadPair SAMReadPairFragment SAMToFastq SAMTrack SAMViewer Scale ScaleBar ScaleBarTrack ScrollButtonTrack SearchResult SelectType Seq2Fastq Sequence Sequence.JSONOutput Sequence.SequenceRetrieverBase Sequence.TextOutput Sequence.XMLOutput SequenceInfo SequenceRulerTrack ServletUtil SmithWatermanAligner SmithWatermanAligner.Alignment SmithWatermanAligner.Config SmithWatermanAligner.StringWrapper SOFA SourcesWidgetSizeChanges SourcesWindowEvents Species SpeciesEntry SpeciesRevision SQLiteAccessSample StandardInputStream StandardOutputStream StringListType StringType StringUtil StringUtil Style SubOperation SuffixArrayBuilder SuffixArrayBuilder.StringWrapper SuffixArrayBuilder.SubArray SVGPanel Switch Tab TabbedTrackFrame TabDropController TabEntry TabEntry.TabEntryFactory TabEventListener TableChangeListener TableData TabViewer Tag TestHelper TextContentFilter TextImage TextLabel TextType ToolBoxTrack Touch TouchableComposite TouchableFocusPanel TouchCancelEvent TouchCancelHandler TouchEndEvent TouchEndHandler TouchEvent TouchMoveEvent TouchMoveHandler TouchStartEvent TouchStartHandler Track Track.TrackFactory TrackBase TrackBase.TrackFrameConfig TrackBean TrackButtonListener TrackButtonListenerAdapter TrackComparator TrackConfig TrackConfigChange TrackConfigChangeImpl TrackConfiguration TrackDescription TrackEntry TrackFactoryHolder TrackFactorySetup TrackFrame TrackFrame TrackFrame TrackFrameState TrackGenTrack TrackGroup TrackGroupBean TrackGroupProperty TrackGroupPropertyBean TrackGroupPropertyChange TrackGroupPropertyChangeListener TrackGroupPropertyChangeListenerAdapter TrackGroupPropertyImpl TrackGroupPropertyWriter TrackInfo TrackInfoChangeListener TrackLayoutManager TrackLoaderGenerator TrackLoaderGenerator.Config TrackPanel TrackPanelBase TrackQueue TrackRangeSelector TrackTitleBar TrackTreeTrack TrackUpdateListener TrackUpdateListenerAdapter TrackView TrackView.Coordinate TrackView.Track TrackView.TrackGroup TrackWindow TrackWindowBean TrackWindowChain TrackWindowChain.WindowUpdateInfo TrackWindowPanel Transparent TreePanel TreeView UInt32 UpperBoundType URLQueryArgumentTrack UTGB UTGBClientErrorCode UTGBClientException UTGBConfig UTGBConfig.Database UTGBConfig.WebAction UTGBDesignFactory UTGBEntryPointBase UTGBErrorCode UTGBException UTGBImageBundle UTGBMaster UTGBProperty Utilities Value ValueDomain ValueParameter ValueSelectorTrack VariationAnnotator VerticalDraggableTrackPanel ViewLoaderTrack WeaverCanvas WeaverMainFrame WebApplicationResource WebTrackBase WidgetDesign WidgetSizeChangeListener WIG2Silk WIG2Silk.WIGHeaderAttribute WIG2Silk.WIGHeaderDescription WIG2SilkReader WIGDatabaseGenerator WIGDatabaseGenerator.WIGHeaderAttribute WIGDatabaseGenerator.WIGHeaderDescription WIGDatabaseReader WIGDatabaseReader.AvgSelector WIGDatabaseReader.MAXSelector WIGDatabaseReader.MedianSelector WIGDatabaseReader.MINSelector WIGGraphCanvasTrack WigGraphData WIGLexer WIGParser WIGParser.attribute_return WIGParser.attributeValue_return WIGParser.description_return WIGParser.descriptionName_return WIGTrack WindowBox WindowControlTrack WindowListener WindowTitleBar Worker WorkQueue XMLAttribute XMLUtil XMLWriter