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Packages that use UTGBShellCommand | |
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org.utgenome.shell |
Uses of UTGBShellCommand in org.utgenome.shell |
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Subclasses of UTGBShellCommand in org.utgenome.shell | |
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class |
AddAction
A UTGBShell sub-command for adding new action class |
class |
Clean
UTGB Shell Sub Command for cleaning target directory |
class |
Compile
A UTGBShell sub command for compiling java source codes with Maven |
class |
Create
Create sub command |
class |
Deploy
|
class |
Eclipse
A sub command to generate Eclipse project files |
class |
FastqRename
|
class |
FastqToFasta
fastq2fasta command |
class |
FastqToSAM
|
class |
GWT
A sub command for creating a GWT interface |
class |
GWTCompile
|
class |
Illumina2Fastq
|
class |
Import
import command |
class |
Keyword
keyword DB management tool |
class |
Maven
Maven utility |
class |
Pack
creating packed FASTA |
class |
QSeqToFastq
|
class |
Repair
|
class |
Sam2Wig
|
class |
SAMToFastq
|
class |
Sequence
Retrieve the genome sequence from the pack file |
class |
Server
A UTGB sub command for starting up a UTGB portable server |
class |
SVNAdd
Sub-command to add the current project to the subversion repository |
class |
Upgrade
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