Uses of Class
org.utgenome.util.repeat.RepeatChainFinder.Interval2D

Packages that use RepeatChainFinder.Interval2D

org.utgenome.util.repeat

Uses of RepeatChainFinder.Interval2D in org.utgenome.util.repeat

Fields in org.utgenome.util.repeat with type parameters of type RepeatChainFinder.Interval2D

List<RepeatChainFinder.Interval2D>

RepeatChainFinder.IntervalCluster.component

Methods in org.utgenome.util.repeat with parameters of type RepeatChainFinder.Interval2D

int	RepeatChainFinder.Interval2D.compareTo(RepeatChainFinder.Interval2D other)
int	RepeatChainFinder.Interval2D.forwardDistance(RepeatChainFinder.Interval2D other)

Method parameters in org.utgenome.util.repeat with type arguments of type RepeatChainFinder.Interval2D

List<RepeatChainFinder.IntervalCluster>

RepeatChainFinder.createClusters(DisjointSet<RepeatChainFinder.Interval2D> clusterSet)

Constructors in org.utgenome.util.repeat with parameters of type RepeatChainFinder.Interval2D

RepeatChainFinder.FlippedInterval2D(RepeatChainFinder.Interval2D orig)

RepeatChainFinder.Interval2D(RepeatChainFinder.Interval2D first, RepeatChainFinder.Interval2D last)

Constructor parameters in org.utgenome.util.repeat with type arguments of type RepeatChainFinder.Interval2D

RepeatChainFinder.IntervalCluster(List<RepeatChainFinder.Interval2D> elements)