org.utgenome.util.aligner.SuffixArrayBuilder
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java.lang.Object
public class SuffixArrayBuilder
SA-IS implementation for building suffix arrays
| Nested Class Summary | |
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static class |
SuffixArrayBuilder.StringWrapper
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static class |
SuffixArrayBuilder.SubArray
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| Constructor Summary | |
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SuffixArrayBuilder(RandomAccess input,
int N,
int K)
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SuffixArrayBuilder(java.lang.String input)
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| Method Summary | |
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int[] |
SAIS()
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void |
SAIS(int[] SA)
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| Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
| Constructor Detail |
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public SuffixArrayBuilder(RandomAccess input,
int N,
int K)
public SuffixArrayBuilder(java.lang.String input)
| Method Detail |
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public int[] SAIS()
public void SAIS(int[] SA)
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