org.utgenome.util.aligner
Class SuffixArrayBuilder.SubArray

java.lang.Object
  org.utgenome.util.aligner.SuffixArrayBuilder.SubArray

All Implemented Interfaces:

RandomAccess

Enclosing class:

SuffixArrayBuilder

public static class SuffixArrayBuilder.SubArray
extends java.lang.Object
implements RandomAccess

Constructor Summary

SuffixArrayBuilder.SubArray(int[] orig, int offset)

Method Summary

int	get(long index)
void	set(long index, int value)
long	size()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SuffixArrayBuilder.SubArray

public SuffixArrayBuilder.SubArray(int[] orig,
                                   int offset)

Method Detail

get

public int get(long index)

Specified by:

get in interface RandomAccess

set

public void set(long index,
                int value)

Specified by:

set in interface RandomAccess

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

size

public long size()

Specified by:

size in interface RandomAccess