org.utgenome.util.aligner
Class SuffixArrayBuilder.StringWrapper

java.lang.Object
  org.utgenome.util.aligner.SuffixArrayBuilder.StringWrapper

All Implemented Interfaces:

RandomAccess

Enclosing class:

SuffixArrayBuilder

public static class SuffixArrayBuilder.StringWrapper
extends java.lang.Object
implements RandomAccess

Field Summary

int[]	array
int	K

Constructor Summary

SuffixArrayBuilder.StringWrapper(java.lang.String s)

Method Summary

char	decode(int value)
int	get(long index)
void	set(long index, int value)
long	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

array

public final int[] array

K

public final int K

Constructor Detail

SuffixArrayBuilder.StringWrapper

public SuffixArrayBuilder.StringWrapper(java.lang.String s)

Method Detail

decode

public char decode(int value)

get

public int get(long index)

Specified by:

get in interface RandomAccess

set

public void set(long index,
                int value)

Specified by:

set in interface RandomAccess

size

public long size()

Specified by:

size in interface RandomAccess