1 /*--------------------------------------------------------------------------
2 * Copyright 2010 utgenome.org
3 *
4 * Licensed under the Apache License, Version 2.0 (the "License");
5 * you may not use this file except in compliance with the License.
6 * You may obtain a copy of the License at
7 *
8 * http://www.apache.org/licenses/LICENSE-2.0
9 *
10 * Unless required by applicable law or agreed to in writing, software
11 * distributed under the License is distributed on an "AS IS" BASIS,
12 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 * See the License for the specific language governing permissions and
14 * limitations under the License.
15 *--------------------------------------------------------------------------*/
16 //--------------------------------------
17 // utgb-core Project
18 //
19 // ReadList.java
20 // Since: 2010/09/02
21 //
22 //--------------------------------------
23 package org.utgenome.gwt.utgb.client.bio;
24
25 import java.util.ArrayList;
26 import java.util.List;
27
28 /**
29 * ReadList is a list of read objects, and used to draw a sequence of blocks on genome.
30 *
31 * @author leo
32 *
33 */
34 public class ReadList extends Interval {
35
36 /**
37 *
38 */
39 private static final long serialVersionUID = 1L;
40
41 private ArrayList<OnGenome> read = new ArrayList<OnGenome>();
42
43 private String name;
44
45 public ReadList() {
46 }
47
48 @Override
49 public String getName() {
50 return name;
51 }
52
53 public void setName(String name) {
54 this.name = name;
55 }
56
57 public void addRead(OnGenome read) {
58 this.read.add(read);
59 }
60
61 public List<OnGenome> getRead() {
62 return this.read;
63 }
64
65 @Override
66 public void accept(OnGenomeDataVisitor visitor) {
67 visitor.visitReadList(this);
68 }
69 }