/*--------------------------------------------------------------------------
    *  Copyright 2009 utgenome.org
    *
    *  Licensed under the Apache License, Version 2.0 (the "License");
    *  you may not use this file except in compliance with the License.
    *  You may obtain a copy of the License at
    *
    *     http://www.apache.org/licenses/LICENSE-2.0
    *
   *  Unless required by applicable law or agreed to in writing, software
   *  distributed under the License is distributed on an "AS IS" BASIS,
   *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   *  See the License for the specific language governing permissions and
   *  limitations under the License.
   *--------------------------------------------------------------------------*/
  //--------------------------------------
  // utgb-core Project
  //
  // CompactWIGData.java
  // Since: 2010/05/29
  //
  // $URL$ 
  // $Author$
  //--------------------------------------
  package org.utgenome.gwt.utgb.client.bio;
  
  import java.util.ArrayList;
  import java.util.HashMap;
  
  public class CompactWIGData implements GraphData {
  	/**
  	 * 
  	 */
  	private static final long serialVersionUID = 1L;
  	/**
  	 * 
  	 */
  	int trackId = -1;
  	float maxValue = Float.MIN_VALUE;
  	float minValue = Float.MAX_VALUE;
  
  	ArrayList<String> browser = null;
  	HashMap<String, String> track = null;
  	float[] data;
  	int start;
  	int span = 1;
  
  	public ReadCoverage toReadCoverage(ChrLoc loc) {
  		int[] coverage = new int[data.length];
  		for (int i = 0; i < data.length; ++i)
  			coverage[i] = (int) data[i];
  		ReadCoverage c = new ReadCoverage(loc.start, loc.end, data.length, coverage);
  		c.minHeight = (int) minValue;
  		c.maxHeight = (int) maxValue;
  		c.pixelWidth = data.length;
  		return c;
  	}
  
  	public int getPixelSize() {
  		return data.length;
  	}
  
  	public void setSpan(int span) {
  		this.span = span;
  	}
  
  	public int getSpan() {
  		return span;
  	}
  
  	public void setStart(int start) {
  		this.start = start;
  	}
  
  	public int getStart() {
  		return start;
  	}
  
  	public int getTrack_id() {
  		return trackId;
  	}
  
  	public void setTrack_id(int track_id) {
  		this.trackId = track_id;
  	}
  
  	public float getMinValue() {
  		return minValue;
  	}
  
  	public void setMinValue(float minValue) {
  		this.minValue = minValue;
  	}
  
  	public float getMaxValue() {
  		return maxValue;
  	}
  
  	public void setMaxValue(float maxValue) {
 		this.maxValue = maxValue;
 	}
 
 	public ArrayList<String> getBrowser() {
 		return browser;
 	}
 
 	public void setBrowser(ArrayList<String> browser) {
 		this.browser = browser;
 	}
 
 	public HashMap<String, String> getTrack() {
 		return track;
 	}
 
 	public void setTrack(HashMap<String, String> track) {
 		this.track = track;
 	}
 
 	public float[] getData() {
 		return data;
 	}
 
 	public void setData(float[] data) {
 		this.data = data;
 	}
 
 	@Override
 	public String toString() {
 		StringBuilder sb = new StringBuilder();
 
 		if (track.isEmpty())
 			return null;
 
 		sb.append("TrackID:" + trackId + "(");
 		if (!browser.isEmpty()) {
 			for (String s : browser) {
 				sb.append(s + ", ");
 			}
 			sb.delete(sb.lastIndexOf(","), sb.length()).append("), (");
 		}
 
 		if (!track.isEmpty()) {
 			for (String s : track.keySet()) {
 				sb.append(s + "=" + track.get(s) + ", ");
 			}
 			sb.delete(sb.lastIndexOf(","), sb.length()).append("), (");
 		}
 		if (data != null) {
 			sb.append(data + ", ");
 		}
 		if (!sb.equals(""))
 			sb.delete(sb.lastIndexOf(","), sb.length()).append(")");
 
 		return sb.toString();
 	}
 
 	public void accept(OnGenomeDataVisitor visitor) {
 		visitor.visitGraph(this);
 	}
 
 	public int getEnd() {
 		// TODO Auto-generated method stub
 		return 0;
 	}
 
 	public String getName() {
 		// TODO Auto-generated method stub
 		return null;
 	}
 
 	public int length() {
 		return 0;
 	}
 
 }