1 /*--------------------------------------------------------------------------
2 * Copyright 2009 utgenome.org
3 *
4 * Licensed under the Apache License, Version 2.0 (the "License");
5 * you may not use this file except in compliance with the License.
6 * You may obtain a copy of the License at
7 *
8 * http://www.apache.org/licenses/LICENSE-2.0
9 *
10 * Unless required by applicable law or agreed to in writing, software
11 * distributed under the License is distributed on an "AS IS" BASIS,
12 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 * See the License for the specific language governing permissions and
14 * limitations under the License.
15 *--------------------------------------------------------------------------*/
16 //--------------------------------------
17 // utgb-core Project
18 //
19 // BEDGene.java
20 // Since: 2010/09/02
21 //
22 // $URL$
23 // $Author$
24 //--------------------------------------
25 package org.utgenome.gwt.utgb.client.bio;
26
27 import java.io.Serializable;
28
29 /**
30 * Representing each gene line of BED format
31 *
32 * @author yoshimura
33 *
34 */
35 public class BEDGene extends Gene implements Serializable {
36
37 private static final long serialVersionUID = 1L;
38
39 public String coordinate;
40 public int score = 0;
41
42 public BEDGene() {
43 }
44
45 public BEDGene(BEDGene other) {
46 super(other);
47 this.coordinate = other.coordinate;
48 this.score = other.score;
49 }
50
51 public CDS cdsRange() {
52 return getCDS().get(0);
53 }
54
55 @Override
56 public void accept(OnGenomeDataVisitor visitor) {
57 visitor.visitBEDGene(this);
58 }
59 }