/*--------------------------------------------------------------------------
    *  Copyright 2007 utgenome.org
    *
    *  Licensed under the Apache License, Version 2.0 (the "License");
    *  you may not use this file except in compliance with the License.
    *  You may obtain a copy of the License at
    *
    *     http://www.apache.org/licenses/LICENSE-2.0
    *
   *  Unless required by applicable law or agreed to in writing, software
   *  distributed under the License is distributed on an "AS IS" BASIS,
   *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   *  See the License for the specific language governing permissions and
   *  limitations under the License.
   *--------------------------------------------------------------------------*/
  //--------------------------------------
  // UTGB Common Project
  //
  // PSLLine.java
  // Since: Jun 5, 2007
  //
  // $URL$ 
  // $Author$
  //--------------------------------------
  package org.utgenome.format.psl;
  
  public class PSLLine {
  	int matches;
  	int misMatches;
  	int repMathces;
  	int nCount;
  	int qNumInsert;
  	int qBaseInsert;
  	int tNumInsert;
  	int tBaseInsert;
  	String strand;
  	String qName;
  	int qSize;
  	int qStart;
  	int qEnd;
  	String tName;
  	int tSize;
  	int tStart;
  	int tEnd;
  	int blockCount;
  	int[] blockSizes;
  	int[] qStarts;
  	int[] tStarts;
  	
  	public PSLLine()
  	{}
  
  	public int getBlockCount() {
  		return blockCount;
  	}
  
  	public void setBlockCount(int blockCount) {
  		this.blockCount = blockCount;
  	}
  
  	public int[] getBlockSizes() {
  		return blockSizes;
  	}
  
  	public void setBlockSizes(int[] blockSizes) {
  		this.blockSizes = blockSizes;
  	}
  
  	public int getMatches() {
  		return matches;
  	}
  
  	public void setMatches(int matches) {
  		this.matches = matches;
  	}
  
  	public int getMisMatches() {
  		return misMatches;
  	}
  
  	public void setMisMatches(int misMatches) {
  		this.misMatches = misMatches;
  	}
  
  	public int getNCount() {
  		return nCount;
  	}
  
  	public void setNCount(int count) {
  		nCount = count;
  	}
  
  	public int getQBaseInsert() {
  		return qBaseInsert;
  	}
  
  	public void setQBaseInsert(int baseInsert) {
  		qBaseInsert = baseInsert;
  	}
 
 	public int getQEnd() {
 		return qEnd;
 	}
 
 	public void setQEnd(int end) {
 		qEnd = end;
 	}
 
 	public String getQName() {
 		return qName;
 	}
 
 	public void setQName(String name) {
 		qName = name;
 	}
 
 	public int getQNumInsert() {
 		return qNumInsert;
 	}
 
 	public void setQNumInsert(int numInsert) {
 		qNumInsert = numInsert;
 	}
 
 	public int getQSize() {
 		return qSize;
 	}
 
 	public void setQSize(int size) {
 		qSize = size;
 	}
 
 	public int getQStart() {
 		return qStart;
 	}
 
 	public void setQStart(int start) {
 		qStart = start;
 	}
 
 	public int[] getQStarts() {
 		return qStarts;
 	}
 
 	public void setQStarts(int[] starts) {
 		qStarts = starts;
 	}
 
 	public int getRepMathces() {
 		return repMathces;
 	}
 
 	public void setRepMathces(int repMathces) {
 		this.repMathces = repMathces;
 	}
 
 	public String getStrand() {
 		return strand;
 	}
 
 	public void setStrand(String strand) {
 		this.strand = strand;
 	}
 
 	public int getTBaseInsert() {
 		return tBaseInsert;
 	}
 
 	public void setTBaseInsert(int baseInsert) {
 		tBaseInsert = baseInsert;
 	}
 
 	public int getTEnd() {
 		return tEnd;
 	}
 
 	public void setTEnd(int end) {
 		tEnd = end;
 	}
 
 	public String getTName() {
 		return tName;
 	}
 
 	public void setTName(String name) {
 		tName = name;
 	}
 
 	public int getTNumInsert() {
 		return tNumInsert;
 	}
 
 	public void setTNumInsert(int numInsert) {
 		tNumInsert = numInsert;
 	}
 
 	public int getTSize() {
 		return tSize;
 	}
 
 	public void setTSize(int size) {
 		tSize = size;
 	}
 
 	public int getTStart() {
 		return tStart;
 	}
 
 	public void setTStart(int start) {
 		tStart = start;
 	}
 
 	public int[] getTStarts() {
 		return tStarts;
 	}
 
 	public void setTStarts(int[] starts) {
 		tStarts = starts;
 	}
 	
 }