org.utgenome.shell
Class Sequence

java.lang.Object
  org.utgenome.shell.UTGBShellCommand
      org.utgenome.shell.Sequence

All Implemented Interfaces:

Comparable<UTGBShellCommand>

public class Sequence
extends UTGBShellCommand

Retrieve the genome sequence from the pack file

Author:

leo

Field Summary

Fields inherited from class org.utgenome.shell.UTGBShellCommand

APP_FOLDER, EXPLODED_WEBAPP_DIR, globalOption, SRC_FOLDER, WEBAPP_FOLDER

Constructor Summary

Sequence()

Method Summary

void	execute(String[] args)
String	getOneLinerDescription()
String	name()

Methods inherited from class org.utgenome.shell.UTGBShellCommand

compareTo, createContextXML, createFileFromTemplate, createFileFromTemplate, execute, getConfigFile, getObsolteConfigurationFile, getOptionHolder, getPath, getProjectResourcePath, getProjectRoot, isInProjectRoot, loadUTGBConfig, maven

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Sequence

public Sequence()

Method Detail

execute

public void execute(String[] args)
             throws Exception

Specified by:

execute in class UTGBShellCommand

Throws:

Exception

getOneLinerDescription

public String getOneLinerDescription()

Specified by:

getOneLinerDescription in class UTGBShellCommand

name

public String name()

Specified by:

name in class UTGBShellCommand