A B C D E F G I K L M N O P Q R S T U V W

A

accept(String) - Method in class org.utgenome.shell.Create.CreateAllScaffoldFileFilter
 
accept(String) - Method in interface org.utgenome.shell.Create.ScaffoldFileFilter
 
AddAction - Class in org.utgenome.shell
A UTGBShell sub-command for adding new action class
AddAction() - Constructor for class org.utgenome.shell.AddAction
 
addContext(String, String) - Method in class org.utgenome.shell.tomcat.TomcatServer
 
addServerListener(ServerListener) - Method in class org.utgenome.shell.UTGBPortable
 
afterStart() - Method in interface org.utgenome.shell.ServerListener
 
afterStart() - Method in class org.utgenome.shell.UTGBPortableWidget
 
afterStop() - Method in interface org.utgenome.shell.ServerListener
 
afterStop() - Method in class org.utgenome.shell.UTGBPortableWidget
 
answerYes - Variable in class org.utgenome.shell.UTGBShell.UTGBShellOption
 
APP_FOLDER - Static variable in class org.utgenome.shell.UTGBShellCommand
 

B

beforeStart() - Method in interface org.utgenome.shell.ServerListener
 
beforeStart() - Method in class org.utgenome.shell.UTGBPortableWidget
 
beforeStop() - Method in interface org.utgenome.shell.ServerListener
 
beforeStop() - Method in class org.utgenome.shell.UTGBPortableWidget
 
buildGUI() - Method in class org.utgenome.shell.UTGBPortableWidget
 

C

Clean - Class in org.utgenome.shell
UTGB Shell Sub Command for cleaning target directory
Clean() - Constructor for class org.utgenome.shell.Clean
 
clearStatus() - Method in class org.utgenome.shell.UTGBPortableWidget
 
compareTo(UTGBShellCommand) - Method in class org.utgenome.shell.UTGBShellCommand
 
Compile - Class in org.utgenome.shell
A UTGBShell sub command for compiling java source codes with Maven
Compile() - Constructor for class org.utgenome.shell.Compile
 
copyFile(InputStream, File) - Static method in class org.utgenome.shell.ScaffoldGenerator
 
copyScaffold(String, String) - Method in class org.utgenome.shell.ScaffoldGenerator
Creates the folder structure for the Tomcat
Create - Class in org.utgenome.shell
Create sub command
Create() - Constructor for class org.utgenome.shell.Create
 
Create.CreateAllScaffoldFileFilter - Class in org.utgenome.shell
 
Create.CreateAllScaffoldFileFilter() - Constructor for class org.utgenome.shell.Create.CreateAllScaffoldFileFilter
 
Create.OverwriteMode - Enum in org.utgenome.shell
 
Create.ScaffoldFileFilter - Interface in org.utgenome.shell
 
createContextXML(String, String, boolean) - Method in class org.utgenome.shell.UTGBShellCommand
 
createEclipseLaunchFile(String, String, String) - Method in class org.utgenome.shell.ScaffoldGenerator
 
createFileFromTemplate(Class<?>, String, String, Properties) - Method in class org.utgenome.shell.UTGBShellCommand
 
createFileFromTemplate(Class<?>, String, String, String, Properties, boolean) - Static method in class org.utgenome.shell.UTGBShellCommand
 
createGWTModuleScaffold(UTGBConfig) - Method in class org.utgenome.shell.ScaffoldGenerator
 
createProjectScaffold(UTGBConfig) - Method in class org.utgenome.shell.ScaffoldGenerator
 
createScaffold(UTGBConfig, String, Create.ScaffoldFileFilter) - Static method in class org.utgenome.shell.Create
 
createTitledBorder(String) - Static method in class org.utgenome.shell.UTGBPortableWidget
 

D

Deploy - Class in org.utgenome.shell
 
Deploy() - Constructor for class org.utgenome.shell.Deploy
 
detectFileType(String) - Static method in class org.utgenome.shell.Import
 

E

Eclipse - Class in org.utgenome.shell
A sub command to generate Eclipse project files
Eclipse() - Constructor for class org.utgenome.shell.Eclipse
 
environment - Variable in class org.utgenome.shell.UTGBShell.UTGBShellOption
 
exec(String) - Static method in class org.utgenome.shell.Maven.CommandExecutor
 
exec(String, String[], File) - Static method in class org.utgenome.shell.Maven.CommandExecutor
 
execCommand(String, String[], File) - Method in class org.utgenome.shell.Maven.CommandExecutor
 
execute(String[]) - Method in class org.utgenome.shell.AddAction
 
execute(String[]) - Method in class org.utgenome.shell.Clean
 
execute(String[]) - Method in class org.utgenome.shell.Compile
 
execute(String[]) - Method in class org.utgenome.shell.Create
 
execute(String[]) - Method in class org.utgenome.shell.Deploy
 
execute(String[]) - Method in class org.utgenome.shell.Eclipse
 
execute(String[]) - Method in class org.utgenome.shell.FastqRename
 
execute(String[]) - Method in class org.utgenome.shell.FastqToFasta
 
execute(String[]) - Method in class org.utgenome.shell.FastqToSAM
 
execute(String[]) - Method in class org.utgenome.shell.GWT
 
execute(String[]) - Method in class org.utgenome.shell.GWTCompile
 
execute(String[]) - Method in class org.utgenome.shell.Illumina2Fastq
 
execute(String[]) - Method in class org.utgenome.shell.Import
 
execute(String[]) - Method in class org.utgenome.shell.Keyword
 
execute(String[]) - Method in class org.utgenome.shell.Maven
 
execute(String[]) - Method in class org.utgenome.shell.Pack
 
execute(String[]) - Method in class org.utgenome.shell.QSeqToFastq
 
execute(String[]) - Method in class org.utgenome.shell.Repair
 
execute(String[]) - Method in class org.utgenome.shell.Sam2Wig
 
execute(String[]) - Method in class org.utgenome.shell.SAMToFastq
 
execute(String[]) - Method in class org.utgenome.shell.ScreenShot
 
execute(String[]) - Method in class org.utgenome.shell.Sequence
 
execute(String[]) - Method in class org.utgenome.shell.Server
 
execute(String[]) - Method in class org.utgenome.shell.SVNAdd
 
execute(String[]) - Method in class org.utgenome.shell.Upgrade
 
execute(UTGBShell.UTGBShellOption, String[]) - Method in class org.utgenome.shell.UTGBShellCommand
 
execute(String[]) - Method in class org.utgenome.shell.UTGBShellCommand
 
EXPLODED_WEBAPP_DIR - Static variable in class org.utgenome.shell.UTGBShellCommand
 

F

FastqRename - Class in org.utgenome.shell
 
FastqRename() - Constructor for class org.utgenome.shell.FastqRename
 
FastqToFasta - Class in org.utgenome.shell
fastq2fasta command
FastqToFasta() - Constructor for class org.utgenome.shell.FastqToFasta
 
FastqToSAM - Class in org.utgenome.shell
 
FastqToSAM() - Constructor for class org.utgenome.shell.FastqToSAM
 
findDir(String) - Method in class org.utgenome.shell.tomcat.TomcatServer
 

G

generateServerURLLinkHTML() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getAjp13port() - Method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
getCatalinaBase() - Method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
getConfigFile() - Method in class org.utgenome.shell.UTGBShellCommand
 
getContextPath() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getGWTModuleName() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getObsolteConfigurationFile() - Method in class org.utgenome.shell.UTGBShellCommand
 
getOneLinerDescription() - Method in class org.utgenome.shell.AddAction
 
getOneLinerDescription() - Method in class org.utgenome.shell.Clean
 
getOneLinerDescription() - Method in class org.utgenome.shell.Compile
 
getOneLinerDescription() - Method in class org.utgenome.shell.Create
 
getOneLinerDescription() - Method in class org.utgenome.shell.Deploy
 
getOneLinerDescription() - Method in class org.utgenome.shell.Eclipse
 
getOneLinerDescription() - Method in class org.utgenome.shell.FastqRename
 
getOneLinerDescription() - Method in class org.utgenome.shell.FastqToFasta
 
getOneLinerDescription() - Method in class org.utgenome.shell.FastqToSAM
 
getOneLinerDescription() - Method in class org.utgenome.shell.GWT
 
getOneLinerDescription() - Method in class org.utgenome.shell.GWTCompile
 
getOneLinerDescription() - Method in class org.utgenome.shell.Illumina2Fastq
 
getOneLinerDescription() - Method in class org.utgenome.shell.Import
 
getOneLinerDescription() - Method in class org.utgenome.shell.Keyword
 
getOneLinerDescription() - Method in class org.utgenome.shell.Maven
 
getOneLinerDescription() - Method in class org.utgenome.shell.Pack
 
getOneLinerDescription() - Method in class org.utgenome.shell.QSeqToFastq
 
getOneLinerDescription() - Method in class org.utgenome.shell.Repair
 
getOneLinerDescription() - Method in class org.utgenome.shell.Sam2Wig
 
getOneLinerDescription() - Method in class org.utgenome.shell.SAMToFastq
 
getOneLinerDescription() - Method in class org.utgenome.shell.ScreenShot
 
getOneLinerDescription() - Method in class org.utgenome.shell.Sequence
 
getOneLinerDescription() - Method in class org.utgenome.shell.Server
 
getOneLinerDescription() - Method in class org.utgenome.shell.SVNAdd
 
getOneLinerDescription() - Method in class org.utgenome.shell.Upgrade
 
getOneLinerDescription() - Method in class org.utgenome.shell.UTGBShellCommand
 
getOptionHolder() - Method in class org.utgenome.shell.Server
 
getOptionHolder() - Method in class org.utgenome.shell.UTGBShellCommand
 
getOSType() - Static method in enum org.utgenome.shell.OSType
Gets the current OS type
getPath(File) - Static method in class org.utgenome.shell.ScaffoldGenerator
 
getPath(File) - Static method in class org.utgenome.shell.UTGBShellCommand
 
getPort() - Method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
getPortNumber() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getProgramInfo() - Static method in class org.utgenome.shell.UTGBShell
 
getProjectConfigDir() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getProjectResourcePath(String) - Method in class org.utgenome.shell.UTGBShellCommand
 
getProjectRoot() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getProjectRoot() - Method in class org.utgenome.shell.UTGBShellCommand
 
getProperties() - Method in class org.utgenome.shell.POM
 
getRevision() - Method in class org.utgenome.shell.POM
Retrieves Subversion's revision number from the pom.xml file
getRevision() - Method in class org.utgenome.shell.POMProperties
 
getServerURL() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getSubCommandNameSet() - Static method in class org.utgenome.shell.UTGBShell
 
getVersion() - Method in class org.utgenome.shell.POM
 
getVersion() - Static method in class org.utgenome.shell.UTGBShell
 
getWebAppDir() - Method in class org.utgenome.shell.UTGBPortableConfig
 
getWorkingDir() - Method in class org.utgenome.shell.UTGBPortableConfig
 
globalOption - Variable in class org.utgenome.shell.UTGBShellCommand
 
GWT - Class in org.utgenome.shell
A sub command for creating a GWT interface
GWT() - Constructor for class org.utgenome.shell.GWT
 
GWTCompile - Class in org.utgenome.shell
 
GWTCompile() - Constructor for class org.utgenome.shell.GWTCompile
 

I

Illumina2Fastq - Class in org.utgenome.shell
 
Illumina2Fastq() - Constructor for class org.utgenome.shell.Illumina2Fastq
 
Import - Class in org.utgenome.shell
import command
Import() - Constructor for class org.utgenome.shell.Import
 
Import.FileType - Enum in org.utgenome.shell
 
isDisplayHelp() - Method in class org.utgenome.shell.UTGBPortableConfig
 
isInProjectRoot() - Method in class org.utgenome.shell.UTGBShellCommand
 
isMavenInstalled() - Static method in class org.utgenome.shell.Maven
 
isUseGUI() - Method in class org.utgenome.shell.UTGBPortableConfig
 
isVerbose() - Method in class org.utgenome.shell.UTGBPortableConfig
 

K

Keyword - Class in org.utgenome.shell
keyword DB management tool
Keyword() - Constructor for class org.utgenome.shell.Keyword
 
Keyword.SubCommand - Enum in org.utgenome.shell
 

L

loadUsage(String) - Static method in class org.utgenome.shell.UTGBShell
 
loadUTGBConfig() - Method in class org.utgenome.shell.UTGBShellCommand
 

M

main(String[]) - Static method in class org.utgenome.shell.tomcat.TomcatServer
entry point for running Tomcat from CUI
main(String[]) - Static method in class org.utgenome.shell.UTGBPortable
entry point of the UTGBServer
main(String[]) - Static method in class org.utgenome.shell.UTGBPortableWidget
 
main(String[]) - Static method in class org.utgenome.shell.UTGBShell
Run UTGB Shell command.
Maven - Class in org.utgenome.shell
Maven utility
Maven() - Constructor for class org.utgenome.shell.Maven
 
maven(String) - Method in class org.utgenome.shell.UTGBShellCommand
 
Maven.CommandExecutor - Class in org.utgenome.shell
 
Maven.CommandExecutor() - Constructor for class org.utgenome.shell.Maven.CommandExecutor
 
mkdirs(File) - Static method in class org.utgenome.shell.Create
Create directories including its parent folders if not exist
mkdirs(File) - Static method in class org.utgenome.shell.ScaffoldGenerator
Create directories including its parent folders if not exist

N

name() - Method in class org.utgenome.shell.AddAction
 
name() - Method in class org.utgenome.shell.Clean
 
name() - Method in class org.utgenome.shell.Compile
 
name() - Method in class org.utgenome.shell.Create
 
name() - Method in class org.utgenome.shell.Deploy
 
name() - Method in class org.utgenome.shell.Eclipse
 
name() - Method in class org.utgenome.shell.FastqRename
 
name() - Method in class org.utgenome.shell.FastqToFasta
 
name() - Method in class org.utgenome.shell.FastqToSAM
 
name() - Method in class org.utgenome.shell.GWT
 
name() - Method in class org.utgenome.shell.GWTCompile
 
name() - Method in class org.utgenome.shell.Illumina2Fastq
 
name() - Method in class org.utgenome.shell.Import
 
name() - Method in class org.utgenome.shell.Keyword
 
name() - Method in class org.utgenome.shell.Maven
 
name() - Method in class org.utgenome.shell.Pack
 
name() - Method in class org.utgenome.shell.QSeqToFastq
 
name() - Method in class org.utgenome.shell.Repair
 
name() - Method in class org.utgenome.shell.Sam2Wig
 
name() - Method in class org.utgenome.shell.SAMToFastq
 
name() - Method in class org.utgenome.shell.ScreenShot
 
name() - Method in class org.utgenome.shell.Sequence
 
name() - Method in class org.utgenome.shell.Server
 
name() - Method in class org.utgenome.shell.SVNAdd
 
name() - Method in class org.utgenome.shell.Upgrade
 
name() - Method in class org.utgenome.shell.UTGBShellCommand
 
newInstance(int) - Static method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 

O

openURL(String) - Static method in class org.utgenome.shell.WebBrowser
 
org.utgenome.shell - package org.utgenome.shell
 
org.utgenome.shell.tomcat - package org.utgenome.shell.tomcat
 
OSType - Enum in org.utgenome.shell
This class provides information of current OS type.

P

Pack - Class in org.utgenome.shell
creating packed FASTA
Pack() - Constructor for class org.utgenome.shell.Pack
 
parse(String) - Static method in class org.utgenome.shell.RegionQueryExpr
 
POM - Class in org.utgenome.shell
POM objects corresponds to a Maven project file (pom.xml)
POM() - Constructor for class org.utgenome.shell.POM
 
POMProperties - Class in org.utgenome.shell
This class is used for retrieving the revision value described in the pom.xml file
POMProperties() - Constructor for class org.utgenome.shell.POMProperties
 
prepareEnvironmentVariables(File) - Static method in class org.utgenome.shell.Maven
 
prepareTemplatePropeties(UTGBConfig) - Method in class org.utgenome.shell.ScaffoldGenerator
 
projectDir - Variable in class org.utgenome.shell.UTGBShell.UTGBShellOption
 
pushStart() - Method in class org.utgenome.shell.UTGBPortableWidget
 

Q

QSeqToFastq - Class in org.utgenome.shell
 
QSeqToFastq() - Constructor for class org.utgenome.shell.QSeqToFastq
 

R

RegionQueryExpr - Class in org.utgenome.shell
 
RegionQueryExpr() - Constructor for class org.utgenome.shell.RegionQueryExpr
 
registerWAR(String, String) - Method in class org.utgenome.shell.tomcat.TomcatServer
 
Repair - Class in org.utgenome.shell
 
Repair() - Constructor for class org.utgenome.shell.Repair
 
rsync(File, File) - Static method in class org.utgenome.shell.Server
 
rsync(String, String) - Static method in class org.utgenome.shell.Server
 
runCommand(String) - Static method in class org.utgenome.shell.UTGBShell
Run UTGB Shell commands
runCommand(UTGBShell.UTGBShellOption, String) - Static method in class org.utgenome.shell.UTGBShell
 
runCommand(UTGBShell.UTGBShellOption, String[]) - Static method in class org.utgenome.shell.UTGBShell
 
runCommand(String[]) - Static method in class org.utgenome.shell.UTGBShell
Run UTGB Shell commands
runInCUIMode() - Method in class org.utgenome.shell.UTGBPortable
 
runInGUIMode() - Method in class org.utgenome.shell.UTGBPortable
 
runMaven(String) - Static method in class org.utgenome.shell.Maven
 
runMaven(String, File) - Static method in class org.utgenome.shell.Maven
 
runMaven(String[]) - Static method in class org.utgenome.shell.Maven
 
runMaven(String[], File) - Static method in class org.utgenome.shell.Maven
 

S

Sam2Wig - Class in org.utgenome.shell
 
Sam2Wig() - Constructor for class org.utgenome.shell.Sam2Wig
 
SAMToFastq - Class in org.utgenome.shell
 
SAMToFastq() - Constructor for class org.utgenome.shell.SAMToFastq
 
ScaffoldGenerator - Class in org.utgenome.shell
Scaffold generator
ScaffoldGenerator(String, Create.ScaffoldFileFilter) - Constructor for class org.utgenome.shell.ScaffoldGenerator
 
ScreenShot - Class in org.utgenome.shell
screenshot commant to take a image data of the read view
ScreenShot() - Constructor for class org.utgenome.shell.ScreenShot
 
Sequence - Class in org.utgenome.shell
Retrieve the genome sequence from the pack file
Sequence() - Constructor for class org.utgenome.shell.Sequence
 
Server - Class in org.utgenome.shell
A UTGB sub command for starting up a UTGB portable server
Server() - Constructor for class org.utgenome.shell.Server
 
ServerListener - Interface in org.utgenome.shell
 
setAjp13port(int) - Method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
setButtonMargin(JButton) - Static method in class org.utgenome.shell.UTGBPortableWidget
 
setCatalinaBase(String) - Method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
setConfiguration(TomcatServerConfiguration) - Method in class org.utgenome.shell.tomcat.TomcatServer
 
setPort(int) - Method in class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
setProperties(POMProperties) - Method in class org.utgenome.shell.POM
 
setRevision(String) - Method in class org.utgenome.shell.POMProperties
 
setStatus(UTGBPortableWidget.MessageType, String) - Method in class org.utgenome.shell.UTGBPortableWidget
 
setTomcatServerLauncher(TomcatServerLauncher) - Method in class org.utgenome.shell.UTGBPortableWidget
 
setVersion(String) - Method in class org.utgenome.shell.POM
 
SRC_FOLDER - Static variable in class org.utgenome.shell.UTGBShellCommand
 
start() - Method in class org.utgenome.shell.tomcat.TomcatServer
Starts a Tomcat server
start() - Method in class org.utgenome.shell.UTGBPortable
Starts the web server
start(int, TimeUnit) - Method in class org.utgenome.shell.UTGBPortable
 
startTomcatServer(UTGBPortableConfig) - Method in class org.utgenome.shell.UTGBPortable
starts the Tomcat server
stop() - Method in class org.utgenome.shell.tomcat.TomcatServer
Stops the tomcat server
stopTomcatServer(UTGBPortableConfig) - Method in class org.utgenome.shell.UTGBPortable
stops the Tomcat server
SVNAdd - Class in org.utgenome.shell
Sub-command to add the current project to the subversion repository
SVNAdd() - Constructor for class org.utgenome.shell.SVNAdd
 
svnAddDir(String, boolean) - Method in class org.utgenome.shell.SVNAdd
 
svnAddFile(String) - Method in class org.utgenome.shell.SVNAdd
 
svnIgnore(String, String, boolean) - Method in class org.utgenome.shell.SVNAdd
 

T

TomcatServer - Class in org.utgenome.shell.tomcat
Embedded Tomcat Server
TomcatServer(int) - Constructor for class org.utgenome.shell.tomcat.TomcatServer
Creates a TomcatServer instance with the specified port
TomcatServer(TomcatServerConfiguration) - Constructor for class org.utgenome.shell.tomcat.TomcatServer
Configures the tomcat server
TomcatServer.Opt - Class in org.utgenome.shell.tomcat
 
TomcatServer.Opt() - Constructor for class org.utgenome.shell.tomcat.TomcatServer.Opt
 
TomcatServerConfiguration - Class in org.utgenome.shell.tomcat
Configuration bean for the TomcatServer.
TomcatServerConfiguration() - Constructor for class org.utgenome.shell.tomcat.TomcatServerConfiguration
 
toSilk(UTGBConfig) - Static method in class org.utgenome.shell.Repair
 
toString() - Method in class org.utgenome.shell.UTGBPortableConfig
 

U

updateLink() - Method in class org.utgenome.shell.UTGBPortableWidget
 
Upgrade - Class in org.utgenome.shell
 
Upgrade() - Constructor for class org.utgenome.shell.Upgrade
 
UTGBPortable - Class in org.utgenome.shell
The stand-alone UTGB server launcher
UTGBPortable(String[]) - Constructor for class org.utgenome.shell.UTGBPortable
Create an instance of the UTGBServer
UTGBPortable(UTGBPortableConfig) - Constructor for class org.utgenome.shell.UTGBPortable
 
UTGBPortableConfig - Class in org.utgenome.shell
The configuration parameters of the UTGBPortable
UTGBPortableConfig() - Constructor for class org.utgenome.shell.UTGBPortableConfig
 
UTGBPortableConfig(int, String, String) - Constructor for class org.utgenome.shell.UTGBPortableConfig
 
UTGBPortableWidget - Class in org.utgenome.shell
GUI Panel of the UTGB Portable Server
UTGBPortableWidget() - Constructor for class org.utgenome.shell.UTGBPortableWidget
 
UTGBPortableWidget(UTGBPortableConfig) - Constructor for class org.utgenome.shell.UTGBPortableWidget
 
UTGBPortableWidget.MessageType - Enum in org.utgenome.shell
 
UTGBShell - Class in org.utgenome.shell
A command line client entry point
UTGBShell() - Constructor for class org.utgenome.shell.UTGBShell
 
UTGBShell.UTGBShellOption - Class in org.utgenome.shell
 
UTGBShell.UTGBShellOption() - Constructor for class org.utgenome.shell.UTGBShell.UTGBShellOption
 
UTGBShellCommand - Class in org.utgenome.shell
A common implementation of the UTGBShell's sub commands
UTGBShellCommand() - Constructor for class org.utgenome.shell.UTGBShellCommand
 
UTGBShellException - Exception in org.utgenome.shell
 
UTGBShellException() - Constructor for exception org.utgenome.shell.UTGBShellException
 
UTGBShellException(String, Throwable) - Constructor for exception org.utgenome.shell.UTGBShellException
 
UTGBShellException(String) - Constructor for exception org.utgenome.shell.UTGBShellException
 
UTGBShellException(Throwable) - Constructor for exception org.utgenome.shell.UTGBShellException
 

V

valueOf(String) - Static method in enum org.utgenome.shell.Create.OverwriteMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.utgenome.shell.Import.FileType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.utgenome.shell.Keyword.SubCommand
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.utgenome.shell.OSType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.utgenome.shell.UTGBPortableWidget.MessageType
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.utgenome.shell.Create.OverwriteMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.utgenome.shell.Import.FileType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.utgenome.shell.Keyword.SubCommand
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.utgenome.shell.OSType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.utgenome.shell.UTGBPortableWidget.MessageType
Returns an array containing the constants of this enum type, in the order they are declared.

W

WEBAPP_FOLDER - Static variable in class org.utgenome.shell.UTGBShellCommand
 
WebBrowser - Class in org.utgenome.shell
Open a given URL via OS's default web browser.
WebBrowser() - Constructor for class org.utgenome.shell.WebBrowser
 

A B C D E F G I K L M N O P Q R S T U V W

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