|
||||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | |||||||||
| Interface Summary | |
|---|---|
| ReadSweeper.ReadSetHandler<T extends OnGenome> | |
| SAMReader.SAMReadFactory | |
| Class Summary | |
|---|---|
| ReadSweeper<T extends OnGenome> | Sweeping SAM reads in their start order |
| SAM2SilkReader | Reader for converting SAM into Silk |
| Sam2WigConverter | Converting SAM into WIG (coverage depth) |
| Sam2WigConverter.CoverageWriter | |
| Sam2WigConverter.SAMRecordCursor | Iterator of SAMRecord |
| SAMLens | Lens for SAM/BAM files |
| SAMReader | SAM File reader |
| SAMReader.CompleteSAMReadFactory | |
| SAMReader.LightWeightSAMReadFactory | |
| SAMReadIterator | Iterator for SAM entries |
| SAMToFastq | Converting SAM/BAM to FASTQ format |
|
||||||||||
| PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES | |||||||||