org.utgenome.format.bed
Interface BEDQuery

All Known Implementing Classes:

BEDDatabase.BEDRangeQuery

public interface BEDQuery

An interface for extracting BED entries using BED2SilkReader.

usage:

  BEDQuery q = new BEDQuery() { 
   public void addTrack(BEDTrack track) {
      // called when a track entry is found 
    } 
   public void addGene(BEDGene gene) {
      // called when a gene entry is found    
    } 
  };
  Lens.loadSilk(q, new BufferedReader(new FileReader(...)));
 

Author:

leo

Method Summary

void	addGene(BEDEntry gene)
void	addTrack(BEDTrack track)
void	reportError(Exception e)

Method Detail

addTrack

void addTrack(BEDTrack track)

addGene

void addGene(BEDEntry gene)

reportError

void reportError(Exception e)