org.utgenome.shell
Class ScreenShot

java.lang.Object
  org.utgenome.shell.UTGBShellCommand
      org.utgenome.shell.ScreenShot

All Implemented Interfaces:

Comparable<UTGBShellCommand>

public class ScreenShot
extends UTGBShellCommand

screenshot commant to take a image data of the read view

Author:

leo

Field Summary

Fields inherited from class org.utgenome.shell.UTGBShellCommand

APP_FOLDER, EXPLODED_WEBAPP_DIR, globalOption, SRC_FOLDER, WEBAPP_FOLDER

Constructor Summary

ScreenShot()

Method Summary

BufferedImage	createReadAlignmentImage(ChrLoc loc, String dbPath)
void	execute(String[] args)
String	getOneLinerDescription()
String	name()
String	replaceVariable(String path, ChrLoc loc)

Methods inherited from class org.utgenome.shell.UTGBShellCommand

compareTo, createContextXML, createFileFromTemplate, createFileFromTemplate, execute, getConfigFile, getObsolteConfigurationFile, getOptionHolder, getPath, getProjectResourcePath, getProjectRoot, isInProjectRoot, loadUTGBConfig, maven, maven

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScreenShot

public ScreenShot()

Method Detail

execute

public void execute(String[] args)
             throws Exception

Specified by:

execute in class UTGBShellCommand

Throws:

Exception

createReadAlignmentImage

public BufferedImage createReadAlignmentImage(ChrLoc loc,
                                              String dbPath)

replaceVariable

public String replaceVariable(String path,
                              ChrLoc loc)

name

public String name()

Specified by:

name in class UTGBShellCommand

getOneLinerDescription

public String getOneLinerDescription()

Specified by:

getOneLinerDescription in class UTGBShellCommand