org.utgenome.format.sam
Interfaces 
ReadSweeper.ReadSetHandler
SAMReader.SAMReadFactory
Classes 
ReadSweeper
SAM2SilkReader
Sam2WigConverter
Sam2WigConverter.CoverageWriter
Sam2WigConverter.SAMRecordCursor
SAMLens
SAMReader
SAMReader.CompleteSAMReadFactory
SAMReader.LightWeightSAMReadFactory
SAMReadIterator
SAMToFastq