All Classes

• ACGT
• ACGTEncoder
• AGPPullParser
• AXTAlignment
• AXTIteator
• AXTLens
• AXTStream
• AbsoluteFocusPanel
• AcceptSpecies
• AcceptSpeciesEntry
• ActionInfo
• ActionPackage
• ActionPackageAlias
• AddAction
• Agent
• Alignment
• AlignmentResult
• AminoAcid
• Animation
• Assembly
• AvgSelector
• BED2Silk
• BED2SilkReader
• BEDDatabase
• BEDEntry
• BEDGene
• BEDHeaderAttribute
• BEDHeaderDescription
• BEDLexer
• BEDParser
• BEDQuery
• BEDRangeQuery
• BEDTrack
• BEDViewer
• BSSAlignment
• BSSRead
• BSSReadView
• BarGraphCanvas
• BeanRetriever
• Blast2Silk
• Blast2SilkConverter
• BlastAlignment
• BlastResult
• BlockReader
• BlockwiseFileReader
• BooleanType
• BooleanTypeForm
• Border
• BrowserInfo
• BrowserService
• BrowserServiceAsync
• BrowserServiceImpl
• ByteListBox
• CDS
• CIGAR
• CallBack
• CanonicalProperties
• CellReference
• ChrLoc
• ChrRange
• ChromosomeMap
• ChromosomeMapCanvas
• ChromosomeMapTrack
• ChromosomeWindow
• Clean
• CloseButton
• CodonTable
• ColorInputForm
• ColorSelectPanel
• ColorType
• ColorUtil
• Command
• CommandExecutor
• CompactACGT
• CompactACGTWriter
• CompactDBGenerator
• CompactFASTA
• CompactFASTAGenerator
• CompactFASTAIndex
• CompactWIGData
• Comparator4ChrName
• Compile
• CompleteSAMReadFactory
• CompressedBuffer
• ComputeDepth
• Config
• ConfigButton
• ConfigInputForm
• ConfigurationTable
• ConnectionInfo
• Content
• ContentFrame
• Converter
• Coordinate
• CoveragePainter
• CoverageStyle
• CoverageWriter
• Crease
• CreaseType
• Create
• CreateAllScaffoldFileFilter
• CustomButton
• CustomTitledBorder
• CytoBand
• CytoBandComprator
• DASDsn
• DASFeature
• DASGFF
• DASLocation
• DASResult
• DASTrack
• DASViewer
• DBBuilder
• DBSelectTrack
• DBType
• DFA12
• DFA14
• DFSIterator
• DOMImplMobileSafari
• DOMUtil
• DSN
• DSNQuery
• DSNSource
• DataChecker
• DataType
• DataTypeBase
• Database
• DatabaseCatalog
• DatabaseEntry
• DatabaseInfo
• DatabaseTable
• DebugToolBoxTrack
• DefaultFASTAReader
• DefaultRegistrerImpl
• DefaultRequestMap
• Deploy
• DepthMeasure
• DepthOutput
• DescriptionURLInfo
• Design
• DisjointSet
• DispInputForm
• DispType
• DotPlot
• DoubleType
• DoubleTypeForm
• DragBar
• DragListener
• DragPoint
• DraggableTable
• DrawStyle
• DynamicForm
• EGTXMLReader
• EagyGeneLine
• EchoBackView
• Eclipse
• EditableLabel
• EditableTable
• Element
• EnhancedGeneticVariation
• Entry
• EventImpl
• Exon
• FASTA
• FASTADatabase
• FASTAPullParser
• FASTAReader
• FASTASequence
• FastqRead
• FastqReader
• FastqRename
• FastqSplitReader
• FastqToBAM
• FastqToFasta
• FastqToSAM
• FastqToSilkReader
• FavGroupClickHandler
• FeatureType
• FileBlock
• FileType
• FindMaximumHeight
• FixedWidthLabel
• FlippedInterval2D
• FloatType
• FloatTypeForm
• FontInfo
• FontMetric
• FontPanel
• FormLabel
• FormatConversionReader
• Frame
• FrameBorder
• FrameButtonListener
• FrameCommand
• FrameCommandImpl
• FrameMoveAbsCommand
• FrameMoveRelCommand
• FrameOperation
• FrameParameterSetCommand
• FrameRevCommand
• FrameSetEndCommand
• FrameSetRevisionCommand
• FrameSetSpeciesCommand
• FrameSetStartCommand
• FrameSetTargetCommand
• FrameZoomAbsCommand
• GETMethodURL
• GFF3Entry
• GFF3Reader
• GWT
• GWTCompile
• GWTGenomeCanvas
• GWTGraphCanvas
• Gap
• Gene
• GeneCanvas
• GeneDBGenerator
• GeneRetriever
• GeneViewer
• GenericDBAccess
• GeneticVariation
• GenomeCanvas
• GenomeCoordinate
• GenomeDB
• GenomeKeywordEntry
• GenomeSequence
• GenomeTrack
• GenomeTrackTextTest
• GenomeWindow
• GradationInputForm
• GradationType
• GraphCanvas
• GraphData
• GraphScale
• GraphStyle
• GraphWindow
• GraphicUtil
• GraphicalOutput
• Group
• GroupEntry
• GroupProperties
• HSQLDBAccess
• HTMLContentFilter
• HasFactory
• HasTouchHandlers
• Hello
• HelloServlet
• HiddenParameter
• HideButton
• HistoryChangeHandler
• HorizontalBorder
• HorizontalTrackFrame
• IUPAC
• Icon
• IconButtonListner
• IconImage
• IconSetPanel
• Illumina2Fastq
• ImageHandle
• ImageLoader
• Import
• ImportStmt
• Indent
• IndexHolder
• InfoSilkGenerator
• InputChangeListener
• InputForm
• IntegerType
• IntegerTypeForm
• IntegerTypeListBox
• Interval
• Interval2D
• IntervalCluster
• IntervalLayout
• IntervalRetriever
• IntervalTree
• JDBCService
• JSONAccumulator
• JSONOutput
• JSONUtil
• KeyAndEntry
• KeyboardShortcut
• Keyword
• KeywordAlias
• KeywordAliasReader
• KeywordDB
• KeywordSearch
• KeywordSearchResult
• KeywordSearchTrack
• KeywordTextBox
• Kmer
• KmerIntegerFactory
• KmerIterator
• LArray
• Layer
• Layout
• LayoutGenerator
• LegacyTrackInformation
• LightWeightSAMReadFactory
• Link
• LinkOperation
• LoadView
• LocationMover
• LocusClickHandler
• LocusLayout
• LowerBoundInputForm
• LowerBoundType
• MAXSelector
• MINSelector
• Maven
• MavenArchiveInfo
• MedianSelector
• MenuOperation
• MenuOperationItem
• MenuPopupWindow
• Message
• MessageType
• MethlEntry
• Method
• MethylViewer
• MiniBrowserTrack
• MinimalDBGenerator
• MouseClickEventImpl
• MouseListenerOnRulerWidget
• MouseMoveListener
• MutationPosition
• MutationType
• MyDragController
• NSeq
• NavigatorTrack
• NewRowListener
• Node
• NodeListImpl
• NonIPadRegistrerImpl
• NowLoadingIcon
• OSInfo
• OSType
• ObjectStreamReader
• OldDescriptionXML
• OldDescriptionXMLReader
• OldUTGBAddTrackTrack
• OldUTGBFrameCommandImpl
• OldUTGBOperationParser
• OldUTGBOptionAttribute
• OldUTGBProperty
• OldUTGBPropertyTrack
• OldUTGBRulerTrack
• OldUTGBSubOperationImpl
• OldUTGBTrack
• OldUTGBTrackGroup
• OldViewXML
• OnDiskAccess
• OnGenome
• OnGenomeDataRetriever
• OnGenomeDataSet
• OnGenomeDataVisitor
• OnGenomeDataVisitorBase
• OnMemoryBuffer
• Operation
• OperationArea
• OperationImpl
• OperationParser
• OperationParserImpl
• OperationTrack
• Opt
• Option
• Optional
• OverlapCounter
• OverlappingKmerIterator
• OverwriteMode
• POM
• POMProperties
• PSLLine
• PSLPullParser
• PacFileAccess
• Pack
• PackButton
• Pager
• Pair
• PairedEndTargetResolver
• Parameter
• ParameterMap
• ParameterTrack
• PasswordType
• PasswordTypeForm
• PathElement
• PeekableReader
• PipeConsumer
• PipeRunner
• PipeRunnerForInputStream
• PipeRunnerForReader
• PipeWorker
• PopupInfo
• PostponedInsertion
• PrioritySearchTree
• ProcessOutputReader
• Prop
• Properties
• PropertyChangeHandler
• PropertyEditTrack
• QSeqToFASTQ
• QSeqToFastq
• QueryBox
• RPCServiceManager
• RandomAccess
• Range
• RangeSelectable
• RawStringWrapper
• Read
• ReadCanvas
• ReadCoverage
• ReadDBBuilder
• ReadDepth
• ReadDisplayStyle
• ReadList
• ReadLocus
• ReadPainter
• ReadQueryConfig
• ReadSetHandler
• ReadSweeper
• ReadTrack
• ReadType
• ReadView
• RealOptionAttribute
• RefSeqTrack
• Reference
• ReferenceReader
• ReferenceSequence
• RefseqGeneRetriever
• RegionQueryExpr
• Registrer
• Relation
• Repair
• RepeatChainFinder
• RequestDispatcher
• RequestHandler
• RequestHandlerBase
• RequestHandlerTable
• RequestMap
• RequestURI
• ResizeBar
• Result
• ResultCollector
• ResultHandler
• Ribbon
• RibbonBlock
• RibbonBrowser
• RibbonCanvas
• RibbonCrease
• RibbonRuler
• RibbonRulerTrack
• RibbonSegment
• RibbonType
• RoughCoveragePainter
• RoughGraphicalOutput
• RoundCircle
• RoundCornerFrame
• RowChangeListener
• Ruler
• RulerLabel
• RulerTrack
• SAM2SilkReader
• SAMCanvas
• SAMLens
• SAMQueryTrack
• SAMRead
• SAMReadFactory
• SAMReadFlag
• SAMReadIterator
• SAMReadLight
• SAMReadPair
• SAMReadPairFragment
• SAMReader
• SAMRecordCursor
• SAMRecordWrap
• SAMToFastq
• SAMTrack
• SAMViewer
• SOFA
• SQLiteAccessSample
• SVGPanel
• SVNAdd
• Sam2Wig
• Sam2WigConverter
• ScaffoldFileFilter
• ScaffoldGenerator
• Scale
• ScaleBar
• ScaleBarTrack
• ScalePainter
• ScreenShot
• ScrollButtonSet
• ScrollButtonTrack
• SearchInput
• SearchResult
• Segment
• SegmentReport
• SegmentType
• Segments
• SelectInputForm
• SelectOptionAttribute
• SelectType
• Seq2Fastq
• Sequence
• SequenceInfo
• SequenceRangeChangeListner
• SequenceRetrieverBase
• SequenceRulerTrack
• SequenceSetter
• Server
• ServerLaunchPanel
• ServerListener
• ServerStatus
• ServletUtil
• SmithWatermanAligner
• SourcesWidgetSizeChanges
• SourcesWindowEvents
• Species
• SpeciesEntry
• SpeciesRevision
• StandardInputStream
• StandardOutputStream
• State
• Strand
• StringListType
• StringType
• StringTypeForm
• StringTypeListBox
• StringUtil
• StringWrapper
• Style
• SubArray
• SubCommand
• SubOperation
• SuffixArrayBuilder
• Switch
• Tab
• TabClickListener
• TabDropController
• TabEntry
• TabEntryFactory
• TabEventListener
• TabViewer
• TabbedTrackFrame
• TableChangeListener
• TableData
• TableType
• Tag
• TarFASTAReader
• Target
• TestHelper
• TextContentFilter
• TextFormatToObjectMapper
• TextImage
• TextLabel
• TextOutput
• TextReader
• TextType
• TextTypeForm
• Token
• TokenType
• TomcatServer
• TomcatServerConfiguration
• TomcatServerLauncher
• TomcatStarter
• ToolBoxTrack
• Touch
• TouchCancelEvent
• TouchCancelHandler
• TouchEndEvent
• TouchEndHandler
• TouchEvent
• TouchMoveEvent
• TouchMoveHandler
• TouchStartEvent
• TouchStartHandler
• TouchableComposite
• TouchableFocusPanel
• Trace
• Track
• TrackBase
• TrackBean
• TrackButtonListener
• TrackButtonListenerAdapter
• TrackComparator
• TrackConfig
• TrackConfigChange
• TrackConfigChangeImpl
• TrackConfiguration
• TrackDescription
• TrackEntry
• TrackFactory
• TrackFactoryHolder
• TrackFactorySetup
• TrackFrame
• TrackFrameConfig
• TrackFrameState
• TrackGenTrack
• TrackGroup
• TrackGroupBean
• TrackGroupFactory
• TrackGroupProperty
• TrackGroupPropertyBean
• TrackGroupPropertyChange
• TrackGroupPropertyChangeListener
• TrackGroupPropertyChangeListenerAdapter
• TrackGroupPropertyImpl
• TrackGroupPropertyWriter
• TrackInfo
• TrackInfoChangeListener
• TrackInfoPanel
• TrackLayoutManager
• TrackLink
• TrackListPanel
• TrackLoaderGenerator
• TrackPanel
• TrackPanelBase
• TrackPropertyChangeImpl
• TrackQueue
• TrackRangeSelector
• TrackResizeButton
• TrackResourceFinder
• TrackTitleBar
• TrackTreeTrack
• TrackUpdateListener
• TrackUpdateListenerAdapter
• TrackView
• TrackWindow
• TrackWindowBean
• TrackWindowChain
• TrackWindowPanel
• Transparent
• TreePanel
• TreePanelSwitch
• TreeView
• Type
• UInt32
• URLQueryArgumentTrack
• URLRewriter
• UTGB
• UTGBClientErrorCode
• UTGBClientException
• UTGBConfig
• UTGBDesignFactory
• UTGBEntryPointBase
• UTGBErrorCode
• UTGBException
• UTGBImageBundle
• UTGBMaster
• UTGBPortable
• UTGBPortableConfig
• UTGBPortableWidget
• UTGBProperty
• UTGBShell
• UTGBShellCommand
• UTGBShellException
• UTGBShellOption
• UpdateCommand
• Upgrade
• UpperBoundInputForm
• UpperBoundType
• Utilities
• Value
• ValueDomain
• ValueLink
• ValueParameter
• ValueSelector
• ValueSelectorTrack
• VariationAnnotator
• VariationType
• VerticalBar
• VerticalDraggableTrackPanel
• ViewLoaderTrack
• Visitor
• WIG2Silk
• WIG2SilkReader
• WIGDatabaseGenerator
• WIGDatabaseReader
• WIGGraphCanvasTrack
• WIGHeaderAttribute
• WIGHeaderDescription
• WIGLexer
• WIGParser
• WIGTrack
• WeaverCanvas
• WeaverMainFrame
• WebAction
• WebApplicationResource
• WebBrowser
• WebTrackBase
• WidgetDesign
• WidgetSizeChangeListener
• WigGraphData
• WindowBox
• WindowButton
• WindowControlTrack
• WindowImpl
• WindowListener
• WindowNavigationBar
• WindowScrollButton
• WindowTitleBar
• WindowUpdateInfo
• WithIndexDBGenerator
• WorkQueue
• Worker
• WorkerCallback
• XMLAttribute
• XMLOutput
• XMLUtil
• XMLWriter
• ZoomButton
• attributeValue_return
• attribute_return
• descriptionName_return
• description_return