1 /*--------------------------------------------------------------------------
2 * Copyright 2009 utgenome.org
3 *
4 * Licensed under the Apache License, Version 2.0 (the "License");
5 * you may not use this file except in compliance with the License.
6 * You may obtain a copy of the License at
7 *
8 * http://www.apache.org/licenses/LICENSE-2.0
9 *
10 * Unless required by applicable law or agreed to in writing, software
11 * distributed under the License is distributed on an "AS IS" BASIS,
12 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 * See the License for the specific language governing permissions and
14 * limitations under the License.
15 *--------------------------------------------------------------------------*/
16 //--------------------------------------
17 // utgb-core Project
18 //
19 // GenomeTrack.java
20 // Since: Feb 17, 2009
21 //
22 // $URL: http://svn.utgenome.org/utgb/trunk/utgb/utgb-core/src/main/java/org/utgenome/gwt/utgb/client/track/lib/GenomeTrack.java $
23 // $Author: yoshimura $
24 //--------------------------------------
25 package org.utgenome.gwt.utgb.client.track.lib;
26
27 import org.utgenome.gwt.utgb.client.db.datatype.StringType;
28 import org.utgenome.gwt.utgb.client.track.Track;
29 import org.utgenome.gwt.utgb.client.track.TrackConfigChange;
30 import org.utgenome.gwt.utgb.client.track.TrackFrame;
31 import org.utgenome.gwt.utgb.client.track.TrackGroup;
32
33 /**
34 * BEDTrack is for visualizing data that can be located on BDE Format Data.
35 *
36 * @deprecated Use {@link ReadTrack} instead
37 *
38 * @author yoshimura
39 *
40 */
41 @Deprecated
42 public class BEDTrack extends GenomeTrack {
43
44 protected final String CONFIG_FILENAME = "fileName";
45
46 public static TrackFactory factory() {
47 return new TrackFactory() {
48 @Override
49 public Track newInstance() {
50 return new BEDTrack();
51 }
52 };
53 }
54
55 public BEDTrack() {
56 super("BED Track");
57 }
58
59 @Override
60 public void draw() {
61 getConfig().setParameter(CONFIG_TRACK_BASE_URL, "utgb-core/BEDViewer?%q&fileName=" + getConfig().getString(CONFIG_FILENAME, ""));
62 super.draw();
63 }
64
65 @Override
66 public void setUp(TrackFrame trackFrame, TrackGroup group) {
67 super.setUp(trackFrame, group);
68
69 getConfig().addConfig("File Name", new StringType(CONFIG_FILENAME), "");
70 }
71
72 @Override
73 public void onChangeTrackConfig(TrackConfigChange change) {
74 super.onChangeTrackConfig(change);
75
76 if (change.contains(CONFIG_FILENAME)) {
77 refresh();
78 }
79 }
80
81 }