1 /*--------------------------------------------------------------------------
2 * Copyright 2009 utgenome.org
3 *
4 * Licensed under the Apache License, Version 2.0 (the "License");
5 * you may not use this file except in compliance with the License.
6 * You may obtain a copy of the License at
7 *
8 * http://www.apache.org/licenses/LICENSE-2.0
9 *
10 * Unless required by applicable law or agreed to in writing, software
11 * distributed under the License is distributed on an "AS IS" BASIS,
12 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 * See the License for the specific language governing permissions and
14 * limitations under the License.
15 *--------------------------------------------------------------------------*/
16 //--------------------------------------
17 // utgb-core Project
18 //
19 // ReadQueryConfig.java
20 // Since: May 26, 2010
21 //
22 // $URL$
23 // $Author$
24 //--------------------------------------
25 package org.utgenome.gwt.utgb.client.bio;
26
27 import java.io.Serializable;
28
29 /**
30 * Read query configuration
31 *
32 * @author leo
33 *
34 */
35 public class ReadQueryConfig implements Serializable {
36
37 /**
38 *
39 */
40 private static final long serialVersionUID = 1L;
41
42 public static enum Layout {
43 PILEUP, COVERAGE
44 }
45
46 public boolean hasCanvasSupport;
47 public Layout layout;
48 public int pixelWidth;
49 public int maxmumNumberOfReadsToDisplay = 500;
50 /**
51 * Path to the WIG db file of the read depth
52 */
53 public String wigPath;
54 public GraphWindow window = GraphWindow.MAX;
55
56 public ReadQueryConfig() {
57 }
58
59 public ReadQueryConfig(int pixelWidth, boolean hasCanvasSupport, Layout layout, int maxmumNumberOfReadsToDisplay, String wigPath) {
60 this(pixelWidth, hasCanvasSupport, layout);
61 this.maxmumNumberOfReadsToDisplay = maxmumNumberOfReadsToDisplay;
62 if (wigPath != null && wigPath.trim().length() != 0)
63 this.wigPath = wigPath;
64 }
65
66 public ReadQueryConfig(int pixelWidth, boolean hasCanvasSupport, Layout layout) {
67 this.pixelWidth = pixelWidth;
68 this.layout = layout;
69 this.hasCanvasSupport = hasCanvasSupport;
70 }
71
72 }