org.utgenome.util.repeat
Class RepeatChainFinder.IntervalCluster

java.lang.Object
  org.utgenome.util.repeat.RepeatChainFinder.IntervalCluster

All Implemented Interfaces:

Comparable<RepeatChainFinder.IntervalCluster>

Enclosing class:

RepeatChainFinder

public static class RepeatChainFinder.IntervalCluster
extends Object
implements Comparable<RepeatChainFinder.IntervalCluster>

Field Summary

List<RepeatChainFinder.Interval2D>	component
int	id
int	length

Constructor Summary

RepeatChainFinder.IntervalCluster(List<RepeatChainFinder.Interval2D> elements)

Method Summary

int	compareTo(RepeatChainFinder.IntervalCluster o)
void	setId(int id)
int	size()
void	toDotFile(Writer out)
String	toString()
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

id

public int id

component

public final List<RepeatChainFinder.Interval2D> component

length

public final int length

Constructor Detail

RepeatChainFinder.IntervalCluster

public RepeatChainFinder.IntervalCluster(List<RepeatChainFinder.Interval2D> elements)

Method Detail

setId

public void setId(int id)

validate

public void validate()
              throws UTGBException

Throws:

UTGBException

compareTo

public int compareTo(RepeatChainFinder.IntervalCluster o)

Specified by:

compareTo in interface Comparable<RepeatChainFinder.IntervalCluster>

size

public int size()

toDotFile

public void toDotFile(Writer out)
               throws IOException

Throws:

IOException

toString

public String toString()

Overrides:

toString in class Object