org.utgenome.util.repeat
Class RepeatChainFinder.Interval2D

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.util.repeat.RepeatChainFinder.Interval2D

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

Enclosing class:

RepeatChainFinder

public static class RepeatChainFinder.Interval2D
extends Interval

2D interval

Author:

leo

See Also:

Serialized Form

Field Summary

int	y1
int	y2

Constructor Summary

RepeatChainFinder.Interval2D()

RepeatChainFinder.Interval2D(int x1, int y1, int x2, int y2)

RepeatChainFinder.Interval2D(RepeatChainFinder.Interval2D first, RepeatChainFinder.Interval2D last)

Method Summary

int	compareTo(RepeatChainFinder.Interval2D other)
Interval	endPoint()
boolean	equals(Object o)
int	forwardDistance(RepeatChainFinder.Interval2D other)
int	hashCode()
boolean	isForward()
boolean	isInLowerRightRegion()
int	maxLength()
Interval	startPoint()
void	toDotFormat(Writer out)
String	toString()

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

accept, adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getColor, getEnd, getName, getStart, hasOverlap, intersect, intersectsWith, isAntiSense, isSense, length, precedes, setEnd, setStart, toJSONArray

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

y1

public int y1

y2

public int y2

Constructor Detail

RepeatChainFinder.Interval2D

public RepeatChainFinder.Interval2D()

RepeatChainFinder.Interval2D

public RepeatChainFinder.Interval2D(int x1,
                                    int y1,
                                    int x2,
                                    int y2)

RepeatChainFinder.Interval2D

public RepeatChainFinder.Interval2D(RepeatChainFinder.Interval2D first,
                                    RepeatChainFinder.Interval2D last)

Method Detail

compareTo

public int compareTo(RepeatChainFinder.Interval2D other)

maxLength

public int maxLength()

toString

public String toString()

Overrides:

toString in class Interval

startPoint

public Interval startPoint()

endPoint

public Interval endPoint()

isInLowerRightRegion

public boolean isInLowerRightRegion()

isForward

public boolean isForward()

forwardDistance

public int forwardDistance(RepeatChainFinder.Interval2D other)

toDotFormat

public void toDotFormat(Writer out)
                 throws IOException

Throws:

IOException

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object