Uses of Package
org.utgenome.format.fasta

Packages that use org.utgenome.format.fasta

org.utgenome.format.fasta	FASTA utilities
org.utgenome.gwt.utgb.server.app	Contains sample codes of web actions.

Classes in org.utgenome.format.fasta used by org.utgenome.format.fasta

CompactACGT
Compact array for ACGT (and N) sequences

CompactFASTA
CompactFASTA is a packed FASTA file, supporting random accesses to sub sequences of a specified chromosome.

CompactFASTA.PacFileAccess

CompactFASTAIndex
A sequence index to packed FASTA files

FASTA.RawStringWrapper

FASTADatabase.NSeq
A holder for retrieving compressed genome sequence

FASTAPullParser
A pull parser for FASTA format files

FASTASequence
A FASTASequence represents an entry in FASTA files

GenomeSequence
A common interface of genome sequences

Kmer
K-mer integer representation of ACGT.

OverlappingKmerIterator
For walking overlapping k-mer integers

Classes in org.utgenome.format.fasta used by org.utgenome.gwt.utgb.server.app

FASTADatabase.NSeq
A holder for retrieving compressed genome sequence