Uses of Class
org.utgenome.format.fasta.CompactACGT

Packages that use CompactACGT

org.utgenome.format.fasta

FASTA utilities

Uses of CompactACGT in org.utgenome.format.fasta

Methods in org.utgenome.format.fasta that return CompactACGT

static CompactACGT	CompactACGT.createFromString(String seq)
CompactACGT	CompactFASTA.getSequence(String chr, int start, int end) Retrieves a genome sequence of the specified range [start, end)
CompactACGT	CompactFASTA.getSequence(String chr, int start, int end, boolean isReverse)
CompactACGT	OverlappingKmerIterator.nextKmer() Return the next K-mer, or null when no more K-mer can be generated .
CompactACGT	CompactACGT.reverseComplement()
CompactACGT	CompactACGT.subSequence(int start, int length) return a subsequence of this ACGT string.

Constructors in org.utgenome.format.fasta with parameters of type CompactACGT

Kmer(CompactACGT acgt)