1 /*--------------------------------------------------------------------------
2 * Copyright 2010 utgenome.org
3 *
4 * Licensed under the Apache License, Version 2.0 (the "License");
5 * you may not use this file except in compliance with the License.
6 * You may obtain a copy of the License at
7 *
8 * http://www.apache.org/licenses/LICENSE-2.0
9 *
10 * Unless required by applicable law or agreed to in writing, software
11 * distributed under the License is distributed on an "AS IS" BASIS,
12 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13 * See the License for the specific language governing permissions and
14 * limitations under the License.
15 *--------------------------------------------------------------------------*/
16 //--------------------------------------
17 // utgb-core Project
18 //
19 // OverlappingKmerIterator.java
20 // Since: 2010/10/05
21 //
22 //--------------------------------------
23 package org.utgenome.format.fasta;
24
25
26 /**
27 * For walking overlapping k-mer integers
28 *
29 * @author leo
30 *
31 */
32 public interface OverlappingKmerIterator {
33
34 /**
35 * Return the next K-mer, or null when no more K-mer can be generated .
36 *
37 * @return next K-mer or null
38 */
39 public CompactACGT nextKmer();
40
41 }