1 /*-------------------------------------------------------------------------- 2 * Copyright 2010 utgenome.org 3 * 4 * Licensed under the Apache License, Version 2.0 (the "License"); 5 * you may not use this file except in compliance with the License. 6 * You may obtain a copy of the License at 7 * 8 * http://www.apache.org/licenses/LICENSE-2.0 9 * 10 * Unless required by applicable law or agreed to in writing, software 11 * distributed under the License is distributed on an "AS IS" BASIS, 12 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 13 * See the License for the specific language governing permissions and 14 * limitations under the License. 15 *--------------------------------------------------------------------------*/ 16 //-------------------------------------- 17 // utgb-core Project 18 // 19 // OverlappingKmerIterator.java 20 // Since: 2010/10/05 21 // 22 //-------------------------------------- 23 package org.utgenome.format.fasta; 24 25 26 /** 27 * For walking overlapping k-mer integers 28 * 29 * @author leo 30 * 31 */ 32 public interface OverlappingKmerIterator { 33 34 /** 35 * Return the next K-mer, or null when no more K-mer can be generated . 36 * 37 * @return next K-mer or null 38 */ 39 public CompactACGT nextKmer(); 40 41 }