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1   /*--------------------------------------------------------------------------
2    *  Copyright 2010 utgenome.org
3    *
4    *  Licensed under the Apache License, Version 2.0 (the "License");
5    *  you may not use this file except in compliance with the License.
6    *  You may obtain a copy of the License at
7    *
8    *     http://www.apache.org/licenses/LICENSE-2.0
9    *
10   *  Unless required by applicable law or agreed to in writing, software
11   *  distributed under the License is distributed on an "AS IS" BASIS,
12   *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13   *  See the License for the specific language governing permissions and
14   *  limitations under the License.
15   *--------------------------------------------------------------------------*/
16  //--------------------------------------
17  // utgb-core Project
18  //
19  // ReadFragment.java
20  // Since: 2010/09/02
21  //
22  //--------------------------------------
23  package org.utgenome.gwt.utgb.client.bio;
24  
25  import org.utgenome.gwt.utgb.client.util.Properties;
26  
27  /**
28   * Read with cigar and sequence information
29   * 
30   * @author leo
31   * 
32   */
33  public class BlastResult extends Read {
34  
35  	/**
36  	 * 
37  	 */
38  	private static final long serialVersionUID = 1L;
39  	public String seq;
40  	public String cigar;
41  	public int bitScore;
42  	public String eValue;
43  	public int identity;
44  	public int matchLength;
45  	public Properties tag = new Properties();
46  
47  	public BlastResult() {
48  
49  	}
50  
51  }