org.utgenome.shell
Class ScreenShot

java.lang.Object
  extended by org.utgenome.shell.UTGBShellCommand
      extended by org.utgenome.shell.ScreenShot
All Implemented Interfaces:
Comparable<UTGBShellCommand>

public class ScreenShot
extends UTGBShellCommand

screenshot commant to take a image data of the read view

Author:
leo

Field Summary
 
Fields inherited from class org.utgenome.shell.UTGBShellCommand
APP_FOLDER, EXPLODED_WEBAPP_DIR, globalOption, SRC_FOLDER, WEBAPP_FOLDER
 
Constructor Summary
ScreenShot()
           
 
Method Summary
 BufferedImage createReadAlignmentImage(ChrLoc loc, String dbPath)
           
 void execute(String[] args)
           
 String getOneLinerDescription()
           
 String name()
           
 String replaceVariable(String path, ChrLoc loc)
           
 
Methods inherited from class org.utgenome.shell.UTGBShellCommand
compareTo, createContextXML, createFileFromTemplate, createFileFromTemplate, execute, getConfigFile, getObsolteConfigurationFile, getOptionHolder, getPath, getProjectResourcePath, getProjectRoot, isInProjectRoot, loadUTGBConfig, maven, maven
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ScreenShot

public ScreenShot()
Method Detail

execute

public void execute(String[] args)
             throws Exception
Specified by:
execute in class UTGBShellCommand
Throws:
Exception

createReadAlignmentImage

public BufferedImage createReadAlignmentImage(ChrLoc loc,
                                              String dbPath)

replaceVariable

public String replaceVariable(String path,
                              ChrLoc loc)

name

public String name()
Specified by:
name in class UTGBShellCommand

getOneLinerDescription

public String getOneLinerDescription()
Specified by:
getOneLinerDescription in class UTGBShellCommand


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