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| Packages that use Gene | |
|---|---|
| org.utgenome.format.bed | |
| org.utgenome.graphics | Graphics drawing classes |
| org.utgenome.gwt.utgb.client.bio | Biological data objects for Google Web Toolkit RPC (Remote Procedure Call). |
| org.utgenome.gwt.utgb.client.canvas | Browser-side graphic drawing libraries using HTML canvas (or VML in IE). |
| org.utgenome.gwt.utgb.server | UTGB's server-side libraries for supporting web request handling, managing database connections, initialization of UTGB web applications, etc. |
| Uses of Gene in org.utgenome.format.bed |
|---|
| Subclasses of Gene in org.utgenome.format.bed | |
|---|---|
class |
BEDEntry
Representing each gene line of BED format |
| Uses of Gene in org.utgenome.graphics |
|---|
| Methods in org.utgenome.graphics with parameters of type Gene | |
|---|---|
void |
GeneCanvas.draw(Gene gene,
Exon exon,
CDS cds,
int yPosition)
|
void |
GeneCanvas.draw(Gene gene,
int yPosition)
|
void |
GeneCanvas.draw(Gene gene,
List<Exon> exonList,
CDS cds,
int yPosition)
|
void |
ReadCanvas.drawGene(Gene gene,
int y)
|
| Uses of Gene in org.utgenome.gwt.utgb.client.bio |
|---|
| Subclasses of Gene in org.utgenome.gwt.utgb.client.bio | |
|---|---|
class |
BEDGene
Representing each gene line of BED format |
| Methods in org.utgenome.gwt.utgb.client.bio with parameters of type Gene | |
|---|---|
void |
GenomeRangeVisitorBase.visitGene(Gene g)
|
void |
GenomeRangeVisitor.visitGene(Gene g)
|
| Constructors in org.utgenome.gwt.utgb.client.bio with parameters of type Gene | |
|---|---|
Gene(Gene other)
|
|
| Uses of Gene in org.utgenome.gwt.utgb.client.canvas |
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| Methods in org.utgenome.gwt.utgb.client.canvas with parameters of type Gene | |
|---|---|
void |
GWTGenomeCanvas.draw(Gene gene,
int yPosition)
|
void |
GWTGenomeCanvas.draw(Gene gene,
List<Exon> exonList,
CDS cds,
int yPosition)
|
void |
GWTGenomeCanvas.drawExon(Gene gene,
Exon exon,
CDS cds,
int yPosition)
|
com.google.gwt.widgetideas.graphics.client.Color |
GWTGenomeCanvas.getExonColor(Gene g)
|
| Uses of Gene in org.utgenome.gwt.utgb.server |
|---|
| Methods in org.utgenome.gwt.utgb.server that return types with arguments of type Gene | |
|---|---|
List<Gene> |
BrowserServiceImpl.getGeneList(String serviceURI)
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