org.utgenome.gwt.utgb.client.bio
Class SAMReadPair

java.lang.Object
  org.utgenome.gwt.utgb.client.bio.Interval
      org.utgenome.gwt.utgb.client.bio.SAMReadPair

All Implemented Interfaces:

Serializable, Comparable<Interval>, GenomeRange

public class SAMReadPair
extends Interval

Mate pair (paired end) of SAMReads

Author:

leo

See Also:

Serialized Form

Constructor Summary

SAMReadPair()

SAMReadPair(SAMReadLight first, SAMReadLight second)

Method Summary

void	accept(GenomeRangeVisitor visitor)
SAMReadLight	getFirst()
Gap	getGap()
String	getName()
SAMReadLight	getSecond()

Methods inherited from class org.utgenome.gwt.utgb.client.bio.Interval

adjustToOneOrigin, atomicSetStartAndEnd, compareTo, contains, contains, correctInterval, follows, getColor, getEnd, getStart, hasOverlap, intersect, intersectsWith, isAntiSense, isSense, length, precedes, setEnd, setStart, toJSONArray, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SAMReadPair

public SAMReadPair()

SAMReadPair

public SAMReadPair(SAMReadLight first,
                   SAMReadLight second)

Method Detail

getFirst

public SAMReadLight getFirst()

getSecond

public SAMReadLight getSecond()

getGap

public Gap getGap()

getName

public String getName()

Specified by:

getName in interface GenomeRange

Overrides:

getName in class Interval

accept

public void accept(GenomeRangeVisitor visitor)

Specified by:

accept in interface GenomeRange

Overrides:

accept in class Interval