org.utgenome.graphics
Class ReadCanvas.DrawStyle

java.lang.Object
  org.utgenome.graphics.ReadCanvas.DrawStyle

Enclosing class:

ReadCanvas

public static class ReadCanvas.DrawStyle
extends Object

Field Summary

float	clippedRegionAlpha
Color	COLOR_FORWARD_STRAND
Color	COLOR_GAP
Color	COLOR_ORPHAN_READ_F
Color	COLOR_ORPHAN_READ_R
Color	COLOR_PADDING
Color	COLOR_READ_DEFAULT
Color	COLOR_REVERSE_STRAND
Color	COLOR_SHADOW
Color	COLOR_WIRED_READ_F
Color	COLOR_WIRED_READ_R
String	colorN
boolean	drawShadow
int	fontWidth
int	geneHeight
int	geneMargin
boolean	overlapPairedReads
int	repeatColorAlpha
boolean	showLabels
boolean	showStrand

Constructor Summary

ReadCanvas.DrawStyle()

Method Summary

Color	getBaseColor(char base)
Color	getClippedReadColor(GenomeRange g)
Color	getReadColor(GenomeRange g)
void	setBaseColor(char base, Color c)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

geneHeight

public int geneHeight

geneMargin

public int geneMargin

overlapPairedReads

public boolean overlapPairedReads

showStrand

public boolean showStrand

drawShadow

public boolean drawShadow

showLabels

public boolean showLabels

fontWidth

public int fontWidth

clippedRegionAlpha

public float clippedRegionAlpha

COLOR_GAP

public Color COLOR_GAP

COLOR_PADDING

public Color COLOR_PADDING

COLOR_SHADOW

public Color COLOR_SHADOW

COLOR_READ_DEFAULT

public Color COLOR_READ_DEFAULT

COLOR_FORWARD_STRAND

public Color COLOR_FORWARD_STRAND

COLOR_REVERSE_STRAND

public Color COLOR_REVERSE_STRAND

COLOR_WIRED_READ_F

public Color COLOR_WIRED_READ_F

COLOR_WIRED_READ_R

public Color COLOR_WIRED_READ_R

COLOR_ORPHAN_READ_F

public Color COLOR_ORPHAN_READ_F

COLOR_ORPHAN_READ_R

public Color COLOR_ORPHAN_READ_R

colorN

public String colorN

repeatColorAlpha

public int repeatColorAlpha

Constructor Detail

ReadCanvas.DrawStyle

public ReadCanvas.DrawStyle()

Method Detail

setBaseColor

public void setBaseColor(char base,
                         Color c)

getBaseColor

public Color getBaseColor(char base)

getReadColor

public Color getReadColor(GenomeRange g)

getClippedReadColor

public Color getClippedReadColor(GenomeRange g)