org.utgenome.format.silk.read
Class Reference

java.lang.Object
  extended by org.utgenome.format.silk.read.Reference
Direct Known Subclasses:
ReadDBBuilder.ReferenceReader

public class Reference
extends Object

Reference Sequence

Author:
leo

Field Summary
 String name
           
 long s2ed
           
 long s2st
           
 String s2strand
           
 int score
           
 long start
           
 String strand
           
 int tag
           
 
Constructor Summary
Reference()
           
 
Method Summary
 void addRead(Read read)
           
 void appendSequence(String sequence)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

name

public String name

start

public long start

strand

public String strand

tag

public int tag

s2st

public long s2st

s2ed

public long s2ed

s2strand

public String s2strand

score

public int score
Constructor Detail

Reference

public Reference()
Method Detail

addRead

public void addRead(Read read)

appendSequence

public void appendSequence(String sequence)


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