org.utgenome.format.silk.read
Class ReadDBBuilder

java.lang.Object
  extended by org.utgenome.format.silk.read.ReadDBBuilder

public class ReadDBBuilder
extends Object

Reader

Author:
leo

Nested Class Summary
static class ReadDBBuilder.ReferenceReader
           
 
Constructor Summary
ReadDBBuilder()
           
ReadDBBuilder(String dbFilePath)
           
 
Method Summary
 void addReference(ReadDBBuilder.ReferenceReader reference)
           
 void build(Reader input)
           
 void build(URL silkFile)
           
 void commit()
           
 void setCoordinate(Coordinate coordinate)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ReadDBBuilder

public ReadDBBuilder()

ReadDBBuilder

public ReadDBBuilder(String dbFilePath)
              throws SQLException
Throws:
SQLException
Method Detail

build

public void build(Reader input)
           throws SQLException
Throws:
SQLException

build

public void build(URL silkFile)
           throws SQLException
Throws:
SQLException

setCoordinate

public void setCoordinate(Coordinate coordinate)
                   throws SQLException
Throws:
SQLException

addReference

public void addReference(ReadDBBuilder.ReferenceReader reference)
                  throws SQLException
Throws:
SQLException

commit

public void commit()
            throws SQLException
Throws:
SQLException


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