org.utgenome.format.blast
Class Blast2Silk.BlastResult.BlastAlignment

java.lang.Object
  org.utgenome.format.blast.Blast2Silk.BlastResult.BlastAlignment

Enclosing class:

Blast2Silk.BlastResult

public static class Blast2Silk.BlastResult.BlastAlignment
extends Object

Nested Class Summary

static class

Blast2Silk.BlastResult.BlastAlignment.Strand

Field Summary

int	alignmentLength
int	bitScore
float	eValue
int	matchLength
Blast2Silk.BlastResult.BlastAlignment.Strand	queryStrand
long	targetLength
String	targetName
Blast2Silk.BlastResult.BlastAlignment.Strand	targetStrand

Constructor Summary

Blast2Silk.BlastResult.BlastAlignment()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

targetName

public String targetName

targetLength

public long targetLength

bitScore

public int bitScore

eValue

public float eValue

matchLength

public int matchLength

alignmentLength

public int alignmentLength

queryStrand

public Blast2Silk.BlastResult.BlastAlignment.Strand queryStrand

targetStrand

public Blast2Silk.BlastResult.BlastAlignment.Strand targetStrand

Constructor Detail

Blast2Silk.BlastResult.BlastAlignment

public Blast2Silk.BlastResult.BlastAlignment()