org.utgenome.format.bed
Class BED2SilkReader

java.lang.Object
  extended by java.io.Reader
      extended by org.utgenome.format.FormatConversionReader
          extended by org.utgenome.format.bed.BED2SilkReader
All Implemented Interfaces:
Closeable, Readable

public class BED2SilkReader
extends FormatConversionReader

BED2SilkReader read the input BED data, and the user can read it as if it were a Silk format.

Author:
leo

Nested Class Summary
 
Nested classes/interfaces inherited from class org.utgenome.format.FormatConversionReader
FormatConversionReader.PipeConsumer
 
Field Summary
 
Fields inherited from class java.io.Reader
lock
 
Constructor Summary
BED2SilkReader(Reader bedReader)
           
 
Method Summary
static BEDQuery scan(Reader input, BEDQuery query)
          Read an input BED data, and retrieves BEDTrack and BEDEntry information through the BEDQuery interface.
 
Methods inherited from class org.utgenome.format.FormatConversionReader
close, read
 
Methods inherited from class java.io.Reader
mark, markSupported, read, read, read, ready, reset, skip
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

BED2SilkReader

public BED2SilkReader(Reader bedReader)
               throws IOException
Throws:
IOException
Method Detail

scan

public static BEDQuery scan(Reader input,
                            BEDQuery query)
                     throws UTGBException
Read an input BED data, and retrieves BEDTrack and BEDEntry information through the BEDQuery interface.

Parameters:
input -
query -
Returns:
Throws:
UTGBException


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