org.utgenome.format.axt
Class AXTAlignment

java.lang.Object
  extended by org.utgenome.format.axt.AXTAlignment

public class AXTAlignment
extends Object

Record in AXT format

Author:
leo

Field Summary
 String aligningAssembly
           
 String d_chr
           
 int d_end
           
 int d_start
           
 int num
           
 String primaryAssembly
           
 String s_chr
           
 int s_end
           
 int s_start
           
 int score
           
 String strand
           
 
Constructor Summary
AXTAlignment()
           
 
Method Summary
 boolean equals(Object obj)
           
 void toAXT(Writer out)
           
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

num

public int num

s_chr

public String s_chr

s_start

public int s_start

s_end

public int s_end

d_chr

public String d_chr

d_start

public int d_start

d_end

public int d_end

strand

public String strand

score

public int score

primaryAssembly

public String primaryAssembly

aligningAssembly

public String aligningAssembly
Constructor Detail

AXTAlignment

public AXTAlignment()
Method Detail

toAXT

public void toAXT(Writer out)
           throws IOException
Throws:
IOException

equals

public boolean equals(Object obj)
Overrides:
equals in class Object


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