Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type
org.apache.ant ant 1.7.1 jar
org.apache.tomcat catalina 6.0.29 jar
org.apache.tomcat coyote 6.0.29 jar
org.apache.tomcat el-api 6.0.29 jar
org.apache.tomcat jasper 6.0.29 jar
org.utgenome utgb-core 1.5.1-SNAPSHOT jar
org.xerial sqlite-jdbc 3.7.2 jar
org.xerial xerial-core 2.0.1 jar
org.xerial xerial-lens 2.0 jar
org.xerial.thirdparty svnkit 1.3.0.5847 jar

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type
junit junit 4.8.1 jar

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type
antlr antlr 2.7.7 jar
com.allen_sauer.gwt gwt-dnd 2.6.5 jar
com.google.gwt.gears gwt-google-apis 1.0.0 jar
commons-fileupload commons-fileupload 1.2 jar
log4j log4j 1.2.9 jar
org.antlr antlr 3.2 jar
org.antlr antlr-runtime 3.2 jar
org.antlr stringtemplate 3.2 jar
org.apache.ant ant-launcher 1.7.1 jar
org.apache.tomcat annotations-api 6.0.29 jar
org.apache.tomcat jasper-el 6.0.29 jar
org.apache.tomcat jasper-jdt 6.0.29 jar
org.apache.tomcat jsp-api 6.0.29 jar
org.apache.tomcat juli 6.0.29 jar
org.apache.tomcat servlet-api 6.0.29 jar
org.utgenome.thirdparty gwt-incubator 20100204-r1747 jar
org.utgenome.thirdparty picard 1.35 jar
org.utgenome.thirdparty sam 1.35 jar
org.xerial xerial-json 2.0 jar
org.xerial xerial-silk 2.0 jar
org.xerial xerial-storage 2.0 jar
org.xerial xerial-xml 2.0 jar
xpp3 xpp3 1.1.4c jar

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type
com.google.gwt gwt-servlet 2.0.4 jar

Project Dependency Graph

Dependency Tree

  • org.utgenome:utgb-shell:jar:1.5.1-SNAPSHOT Information
    • org.utgenome:utgb-core:jar:1.5.1-SNAPSHOT (compile) Information
      • commons-fileupload:commons-fileupload:jar:1.2 (compile) Information
      • org.apache.ant:ant:jar:1.7.1 (compile) Information
      • org.utgenome.thirdparty:sam:jar:1.35 (compile) Information
      • org.utgenome.thirdparty:picard:jar:1.35 (compile) Information
      • org.xerial:sqlite-jdbc:jar:3.7.2 (compile) Information
      • org.xerial:xerial-storage:jar:2.0 (compile) Information
      • com.google.gwt.gears:gwt-google-apis:jar:1.0.0 (compile) Information
      • com.allen_sauer.gwt:gwt-dnd:jar:2.6.5 (compile) Information
      • log4j:log4j:jar:1.2.9 (compile) Information
      • org.utgenome.thirdparty:gwt-incubator:jar:20100204-r1747 (compile) Information
      • com.google.gwt:gwt-servlet:jar:2.0.4 (runtime) Information
      • org.xerial:xerial-lens:jar:2.0 (compile) Information
      • org.xerial:xerial-core:jar:2.0.1 (compile) Information
    • org.xerial.thirdparty:svnkit:jar:1.3.0.5847 (compile) Information
    • org.apache.tomcat:catalina:jar:6.0.29 (compile) Information
      • org.apache.tomcat:servlet-api:jar:6.0.29 (compile) Information
      • org.apache.tomcat:juli:jar:6.0.29 (compile) Information
      • org.apache.tomcat:annotations-api:jar:6.0.29 (compile) Information
    • org.apache.tomcat:coyote:jar:6.0.29 (compile) Information
      • org.apache.tomcat:catalina:jar:6.0.29 (compile) Information
      • org.apache.tomcat:servlet-api:jar:6.0.29 (compile) Information
      • org.apache.tomcat:juli:jar:6.0.29 (compile) Information
    • org.apache.tomcat:jasper:jar:6.0.29 (compile) Information
      • org.apache.tomcat:servlet-api:jar:6.0.29 (compile) Information
      • org.apache.tomcat:juli:jar:6.0.29 (compile) Information
      • org.apache.tomcat:jsp-api:jar:6.0.29 (compile) Information
        • org.apache.tomcat:el-api:jar:6.0.29 (compile) Information
        • org.apache.tomcat:servlet-api:jar:6.0.29 (compile) Information
      • org.apache.tomcat:catalina:jar:6.0.29 (compile) Information
      • org.apache.tomcat:el-api:jar:6.0.29 (compile) Information
      • org.apache.tomcat:jasper-jdt:jar:6.0.29 (compile) Information
      • org.apache.tomcat:jasper-el:jar:6.0.29 (compile) Information
        • org.apache.tomcat:el-api:jar:6.0.29 (compile) Information
    • org.apache.tomcat:el-api:jar:6.0.29 (compile) Information
    • org.apache.ant:ant:jar:1.7.1 (compile) Information
      • org.apache.ant:ant-launcher:jar:1.7.1 (compile) Information
    • org.xerial:sqlite-jdbc:jar:3.7.2 (compile) Information
    • org.xerial:xerial-lens:jar:2.0 (compile) Information
      • org.xerial:xerial-silk:jar:2.0 (compile) Information
        • org.xerial:xerial-json:jar:2.0 (compile) Information
          • org.antlr:antlr:jar:3.2 (compile) Information
        • org.antlr:antlr:jar:3.2 (compile) Information
          • org.antlr:antlr-runtime:jar:3.2 (compile) Information
            • org.antlr:stringtemplate:jar:3.2 (compile) Information
              • antlr:antlr:jar:2.7.7 (compile) Information
      • org.xerial:xerial-xml:jar:2.0 (compile) Information
    • org.xerial:xerial-core:jar:2.0.1 (compile) Information
    • junit:junit:jar:4.8.1 (test) Information

Licenses

Apache Software License, version 1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Public Domain: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Apache 2: UTGB Core, UTGB Shell

Unknown: ANTLR Grammar Tool, Antlr 3 Runtime, Unnamed - com.allen_sauer.gwt:gwt-dnd:jar:2.6.5, Unnamed - com.google.gwt.gears:gwt-google-apis:jar:1.0.0, Unnamed - log4j:log4j:jar:1.2.9, Unnamed - org.apache.ant:ant-launcher:jar:1.7.1, Unnamed - org.apache.tomcat:annotations-api:jar:6.0.29, Unnamed - org.apache.tomcat:catalina:jar:6.0.29, Unnamed - org.apache.tomcat:coyote:jar:6.0.29, Unnamed - org.apache.tomcat:el-api:jar:6.0.29, Unnamed - org.apache.tomcat:jasper-el:jar:6.0.29, Unnamed - org.apache.tomcat:jasper-jdt:jar:6.0.29, Unnamed - org.apache.tomcat:jasper:jar:6.0.29, Unnamed - org.apache.tomcat:jsp-api:jar:6.0.29, Unnamed - org.apache.tomcat:juli:jar:6.0.29, Unnamed - org.apache.tomcat:servlet-api:jar:6.0.29, Unnamed - org.utgenome.thirdparty:gwt-incubator:jar:20100204-r1747, Unnamed - org.utgenome.thirdparty:picard:jar:1.35, Unnamed - org.utgenome.thirdparty:sam:jar:1.35, Unnamed - org.xerial.thirdparty:svnkit:jar:1.3.0.5847, org.apache.tools.ant

BSD License: AntLR Parser Generator

BSD licence: ANTLR StringTemplate

Common Public License Version 1.0: JUnit

The Apache Software License, Version 2.0: FileUpload, GWT Servlet Library 2.0, SQLite JDBC, Xerial Core, Xerial JSON Library, Xerial Lens Library, Xerial Silk Library, Xerial Storage, Xerial XML Library

Indiana University Extreme! Lab Software License, vesion 1.1.1: MXP1: Xml Pull Parser 3rd Edition (XPP3)

Dependency File Details

Filename Size Entries Classes Packages JDK Rev Debug
antlr-2.7.7.jar 434.85 kB 239 224 12 1.2 debug
gwt-dnd-2.6.5.jar 117.65 kB 112 53 4 1.5 debug
gwt-servlet-2.0.4.jar 1.50 MB 1,590 1,507 54 1.5 debug
gwt-google-apis-1.0.0.jar 35.75 kB 43 12 5 1.4 debug
commons-fileupload-1.2.jar 51.84 kB 57 40 5 1.3 debug
junit-4.8.1.jar 231.49 kB 267 230 30 1.5 debug
log4j-1.2.9.jar 344.03 kB 273 244 18 1.1 debug
antlr-3.2.jar 874.14 kB 331 212 7 1.5 debug
antlr-runtime-3.2.jar 148.43 kB 122 109 4 1.4 debug
stringtemplate-3.2.jar 167.99 kB 83 81 4 1.4 debug
ant-1.7.1.jar 1.26 MB 818 769 29 1.2 debug
ant-launcher-1.7.1.jar 11.86 kB 12 5 1 1.2 debug
annotations-api-6.0.29.jar 14.88 kB 32 21 5 1.5 debug
catalina-6.0.29.jar 1.14 MB 609 538 25 1.5 debug
coyote-6.0.29.jar 740.37 kB 400 353 25 1.5 debug
el-api-6.0.29.jar 31.62 kB 32 25 1 1.5 debug
jasper-6.0.29.jar 512.70 kB 276 247 12 1.5 debug
jasper-el-6.0.29.jar 106.03 kB 83 71 4 1.5 debug
jasper-jdt-6.0.29.jar 1.34 MB 446 388 15 1.2 debug
jsp-api-6.0.29.jar 74.90 kB 78 60 3 1.5 debug
juli-6.0.29.jar 25.86 kB 22 14 2 1.5 debug
servlet-api-6.0.29.jar 86.16 kB 63 42 2 1.5 debug
utgb-core-1.5.1-SNAPSHOT.jar 1.86 MB 1,518 933 64 1.5 debug
gwt-incubator-20100204-r1747.jar 2.28 MB 2,121 1,303 83 1.5 debug
picard-1.35.jar 719.01 kB 219 203 12 1.6 debug
sam-1.35.jar 500.47 kB 155 147 4 1.6 debug
sqlite-jdbc-3.7.2.jar 3.05 MB 179 123 3 1.5 debug
xerial-core-2.0.1.jar 328.82 kB 268 238 19 1.6 debug
xerial-json-2.0.jar 71.73 kB 61 46 2 1.6 debug
xerial-lens-2.0.jar 322.06 kB 236 205 14 1.6 debug
xerial-silk-2.0.jar 198.18 kB 133 112 6 1.6 debug
xerial-storage-2.0.jar 134.79 kB 143 119 15 1.6 debug
xerial-xml-2.0.jar 75.84 kB 69 54 6 1.6 debug
svnkit-1.3.0.5847.jar 1.75 MB 806 744 28 1.2 debug
xpp3-1.1.4c.jar 117.25 kB 78 56 13 1.1 debug
Total Size Entries Classes Packages JDK Rev Debug
35 20.52 MB 11,974 9,528 536 1.6 35
compile: 33 compile: 18.79 MB compile: 10,117 compile: 7,791 compile: 452 - compile: 33
test: 1 test: 231.49 kB test: 267 test: 230 test: 30 - test: 1
runtime: 1 runtime: 1.50 MB runtime: 1,590 runtime: 1,507 runtime: 54 - runtime: 1

Dependency Repository Locations

Repo ID URL Release Snapshot
apache.snapshots http://people.apache.org/repo/m2-snapshot-repository - Yes
xerial-snapshot http://www.xerial.org/maven/repository/snapshot Yes Yes
utgb http://maven.utgenome.org/repository/artifact Yes Yes
sonatype-nexus-snapshots http://oss.sonatype.org/content/repositories/snapshots - Yes
utgb-snapshot http://maven.utgenome.org/repository/snapshot Yes Yes
xerial http://www.xerial.org/maven/repository/artifact Yes Yes
antlr-snapshot http://antlr.org/antlr-snapshot Yes Yes
central http://repo1.maven.org/maven2 Yes -
apache.org http://people.apache.org/repo/m2-snapshot-repository - Yes

Repository locations for each of the Dependencies.

Artifact apache.snapshots xerial-snapshot utgb sonatype-nexus-snapshots utgb-snapshot xerial antlr-snapshot central apache.org
antlr:antlr:jar:2.7.7 - - - - - - - Found at http://repo1.maven.org/maven2 -
com.allen_sauer.gwt:gwt-dnd:jar:2.6.5 - - Found at http://maven.utgenome.org/repository/artifact - - - - - -
com.google.gwt:gwt-servlet:jar:2.0.4 - - - - - - - Found at http://repo1.maven.org/maven2 -
com.google.gwt.gears:gwt-google-apis:jar:1.0.0 - - Found at http://maven.utgenome.org/repository/artifact - - - - - -
commons-fileupload:commons-fileupload:jar:1.2 - - - - - - - Found at http://repo1.maven.org/maven2 -
junit:junit:jar:4.8.1 - - - - - - - Found at http://repo1.maven.org/maven2 -
log4j:log4j:jar:1.2.9 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.antlr:antlr:jar:3.2 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.antlr:antlr-runtime:jar:3.2 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.antlr:stringtemplate:jar:3.2 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.ant:ant:jar:1.7.1 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.ant:ant-launcher:jar:1.7.1 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:annotations-api:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:catalina:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:coyote:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:el-api:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:jasper:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:jasper-el:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:jasper-jdt:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:jsp-api:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:juli:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.apache.tomcat:servlet-api:jar:6.0.29 - - - - - - - Found at http://repo1.maven.org/maven2 -
org.utgenome:utgb-core:jar:1.5.1-SNAPSHOT - - - - - - - - -
org.utgenome.thirdparty:gwt-incubator:jar:20100204-r1747 - - Found at http://maven.utgenome.org/repository/artifact - - - - - -
org.utgenome.thirdparty:picard:jar:1.35 - - Found at http://maven.utgenome.org/repository/artifact - - - - - -
org.utgenome.thirdparty:sam:jar:1.35 - - Found at http://maven.utgenome.org/repository/artifact - - - - - -
org.xerial:sqlite-jdbc:jar:3.7.2 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial:xerial-core:jar:2.0.1 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial:xerial-json:jar:2.0 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial:xerial-lens:jar:2.0 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial:xerial-silk:jar:2.0 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial:xerial-storage:jar:2.0 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial:xerial-xml:jar:2.0 - - - - - Found at http://www.xerial.org/maven/repository/artifact - Found at http://repo1.maven.org/maven2 -
org.xerial.thirdparty:svnkit:jar:1.3.0.5847 - - - - - Found at http://www.xerial.org/maven/repository/artifact - - -
xpp3:xpp3:jar:1.1.4c - - - - - - - Found at http://repo1.maven.org/maven2 -
Total apache.snapshots xerial-snapshot utgb sonatype-nexus-snapshots utgb-snapshot xerial antlr-snapshot central apache.org
35 (compile: 33, test: 1, runtime: 1) 0 0 5 0 0 8 0 28 0