compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

Dependency Tree

• org.utgenome.browser:utgb-medaka:war
  • junit:junit:jar
  • org.apache.tomcat:servlet-api:jar
  • com.google.gwt:gwt-user:jar
  • org.utgenome:utgb-core:jar
    • log4j:log4j:jar
    • com.allen_sauer.gwt:gwt-dnd:jar
    • org.xerial:xerial-storage:jar
      • commons-dbutils:commons-dbutils:jar
      • commons-collections:commons-collections:jar
      • org.xerial.thirdparty:org.postgresql.driver:jar

    • com.google.gwt.gears:gwt-google-apis:jar
    • commons-fileupload:commons-fileupload:jar
    • org.xerial:sqlite-jdbc:jar

  • com.google.gwt:gwt-servlet:jar
  • org.xerial:xerial-core:jar
    • org.antlr:antlr-runtime:jar
    • org.antlr:stringtemplate:jar
    • xpp3:xpp3:jar

Dependency Listings

UTGB Medaka

UTGB Medaka Genome Browser

http://utgenome.org/utgb-track-base/utgb-medaka

JUnit

JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java.

http://junit.org

Unnamed - org.apache.tomcat:servlet-api:jar:6.0.13

javax.servlet package

Unnamed - com.google.gwt:gwt-user:jar:1.5.0

UTGB Core

UTGB Core Components

http://utgenome.org/utgb-core

Unnamed - log4j:log4j:jar:1.2.9

Unnamed - com.allen_sauer.gwt:gwt-dnd:jar:2.0.7

Xerial Storage

Xerial Storage: B-Trees, Column-Compressed Storage

http://www.xerial.org/svn/project/XerialJ/trunk/xerial-base/xerial-storage

DbUtils

A package of Java utility classes for easing JDBC development

http://jakarta.apache.org/commons/${pom.artifactId.substring(8)}/

Collections

Types that extend and augment the Java Collections Framework.

http://jakarta.apache.org/commons/collections/

Unnamed - org.xerial.thirdparty:org.postgresql.driver:jar:8.2-jdbc3

Unnamed - com.google.gwt.gears:gwt-google-apis:jar:1.0.0

FileUpload

The FileUpload component provides a simple yet flexible means of adding support for multipart file upload functionality to servlets and web applications.

http://jakarta.apache.org/commons/fileupload/

SQLite JDBC

SQLite JDBC library

http://www.xerial.org/maven/repository/site/xerial/sqlite-jdbc

Unnamed - com.google.gwt:gwt-servlet:jar:1.5.0

Xerial Core

Xerial Core: standard utilities for XerialJ project

http://www.xerial.org/maven/repository/site/xerial/xerial-core

AntLR Parser Runtime

The runtime classes required to execute parsers generated by ANTLR.

http://antlr.org/

StringTemplate Template Engine

StringTemplate is a java template engine (with ports for C# and Python) for generating source code, web pages, emails, or any other formatted text output.

http://www.stringtemplate.org

MXP1: Xml Pull Parser 3rd Edition (XPP3)

MXP1 is a stable XmlPull parsing engine that is based on ideas from XPP and in particular XPP2 but completely revised and rewritten to take the best advantage of latest JIT JVMs such as Hotspot in JDK 1.4+.

http://www.extreme.indiana.edu/xgws/xsoap/xpp/mxp1/