Surefire Report

Summary

[Summary] [Package List] [Test Cases]


Tests Errors Failures Skipped Success Rate Time
121 1 0 2 97.521% 83.374

Note: failures are anticipated and checked for with assertions while errors are unanticipated.


Package List

[Summary] [Package List] [Test Cases]


Package Tests Errors Failures Skipped Success Rate Time
org.utgenome.gwt.utgb.server.app 2 0 0 0 100% 0.454
org.utgenome.gwt.utgb.canvas 6 0 0 0 100% 0.028
org.utgenome.util.aligner 3 0 0 0 100% 0.025
org.utgenome.util.kmer 1 0 0 0 100% 0.001
org.utgenome.format.fastq 6 0 0 0 100% 0.113
org.utgenome.gwt.utgb.server 7 0 0 0 100% 0.941
org.utgenome.format.wig 2 0 0 0 100% 0.087
org.utgenome.format.silk.read 2 0 0 0 100% 0.536
org.utgenome.format.illumina 2 0 0 0 100% 0.046
org.utgenome.format.blast 1 0 0 0 100% 0.068
org.utgenome.gwt.utgb.bio 11 0 0 0 100% 0.064
org.utgenome.format.keyword 4 0 0 0 100% 0.199
org.utgenome.shell.tomcat 1 0 0 0 100% 1.426
org.utgenome.format.bed 6 0 0 1 83.333% 0.531
org.utgenome.format.sam 8 0 0 0 100% 2.888
org.utgenome.format.fasta 18 0 0 0 100% 1.046
org.utgenome.config 5 0 0 0 100% 0.198
org.utgenome.gwt.utgb 8 1 0 0 87.5% 0.079
org.utgenome.util 1 0 0 0 100% 0.011
org.utgenome.shell 23 0 0 1 95.652% 73.608
org.utgenome.format.gff3 1 0 0 0 100% 0.002
org.utgenome.gwt.utgb.server.bio 2 0 0 0 100% 1.021
org.utgenome.gwt.widget.client 1 0 0 0 100% 0.002

Note: package statistics are not computed recursively, they only sum up all of its testsuites numbers.

org.utgenome.gwt.utgb.server.app

Class Tests Errors Failures Skipped Success Rate Time
ReadViewTest 1 0 0 0 100% 0.024
FontPanelTest 1 0 0 0 100% 0.43

org.utgenome.gwt.utgb.canvas

Class Tests Errors Failures Skipped Success Rate Time
IntervalTreeTest 5 0 0 0 100% 0.005
TrackWindowChainTest 1 0 0 0 100% 0.023

org.utgenome.util.aligner

Class Tests Errors Failures Skipped Success Rate Time
SmithWatermanAlignerTest 3 0 0 0 100% 0.025

org.utgenome.util.kmer

Class Tests Errors Failures Skipped Success Rate Time
KmerIntegerFactoryTest 1 0 0 0 100% 0.001

org.utgenome.format.fastq

Class Tests Errors Failures Skipped Success Rate Time
FastqReaderTest 1 0 0 0 100% 0.003
FastqToSilkReaderTest 1 0 0 0 100% 0.002
FastqToBAMTest 4 0 0 0 100% 0.108

org.utgenome.gwt.utgb.server

Class Tests Errors Failures Skipped Success Rate Time
SearchResultTest 1 0 0 0 100% 0.037
RequestDispatcherTest 2 0 0 0 100% 0.059
TrackDescriptionTest 1 0 0 0 100% 0.145
JDBCServiceTest 1 0 0 0 100% 0.62
BrowserServiceImplTest 2 0 0 0 100% 0.08

org.utgenome.format.wig

Class Tests Errors Failures Skipped Success Rate Time
WIG2SilkTest 1 0 0 0 100% 0.001
WIG2SilkReaderTest 1 0 0 0 100% 0.086

org.utgenome.format.silk.read

Class Tests Errors Failures Skipped Success Rate Time
ReadDBBuilderTest 2 0 0 0 100% 0.536

org.utgenome.format.illumina

Class Tests Errors Failures Skipped Success Rate Time
QSeqToFASTQTest 1 0 0 0 100% 0.04
Seq2FastqTest 1 0 0 0 100% 0.006

org.utgenome.format.blast

Class Tests Errors Failures Skipped Success Rate Time
Blast2SilkTest 1 0 0 0 100% 0.068

org.utgenome.gwt.utgb.bio

Class Tests Errors Failures Skipped Success Rate Time
IUPACTest 1 0 0 0 100% 0.023
ACGTEncoderTest 3 0 0 0 100% 0.002
CodonTableTest 2 0 0 0 100% 0.027
CIGARTest 2 0 0 0 100% 0.01
IntervalTest 3 0 0 0 100% 0.002

org.utgenome.format.keyword

Class Tests Errors Failures Skipped Success Rate Time
KeywordAliasReaderTest 1 0 0 0 100% 0.006
KeywordDBTest 3 0 0 0 100% 0.193

org.utgenome.shell.tomcat

Class Tests Errors Failures Skipped Success Rate Time
TomcatServerTest 1 0 0 0 100% 1.426

org.utgenome.format.bed

Class Tests Errors Failures Skipped Success Rate Time
BEDLexerTest 1 0 0 1 0% 0.002
BED2SilkTest 3 0 0 0 100% 0.184
BED2SilkReaderTest 2 0 0 0 100% 0.345

org.utgenome.format.sam

Class Tests Errors Failures Skipped Success Rate Time
Sam2WigConverterTest 2 0 0 0 100% 2.39
ReadSweeperTest 1 0 0 0 100% 0.184
SAMReaderTest 1 0 0 0 100% 0.003
SAM2SilkReaderTest 2 0 0 0 100% 0.234
BAMReaderTest 2 0 0 0 100% 0.077

org.utgenome.format.fasta

Class Tests Errors Failures Skipped Success Rate Time
CompactFASTAIndexTest 2 0 0 0 100% 0.361
FASTADatabaseTest 1 0 0 0 100% 0.031
CompactACGTWriterTest 2 0 0 0 100% 0.005
CompactFASTAGeneratorTest 2 0 0 0 100% 0.237
FASTAPullParserTest 3 0 0 0 100% 0.043
CompactFASTATest 4 0 0 0 100% 0.356
CompactACGTTest 4 0 0 0 100% 0.013

org.utgenome.config

Class Tests Errors Failures Skipped Success Rate Time
TrackConfigurationTest 2 0 0 0 100% 0.022
OldViewXMLTest 1 0 0 0 100% 0.119
UTGBConfigTest 2 0 0 0 100% 0.057

org.utgenome.gwt.utgb

Class Tests Errors Failures Skipped Success Rate Time
DatabaseFolderTest 1 0 0 0 100% 0.003
CanonicalPropertiesTest 1 0 0 0 100% 0.01
BEDReadTest 1 0 0 0 100% 0.002
TrackViewTest 2 0 0 0 100% 0.032
PrioritySearchTreeTest 3 1 0 0 66.667% 0.032

org.utgenome.util

Class Tests Errors Failures Skipped Success Rate Time
FileResourceTest 1 0 0 0 100% 0.011

org.utgenome.shell

Class Tests Errors Failures Skipped Success Rate Time
FastqRenameTest 1 0 0 0 100% 0.007
Sam2WigTest 1 0 0 0 100% 0.868
MavenTest 2 0 0 0 100% 0.364
Illumina2FastqTest 1 0 0 0 100% 0.007
QSeqToFastqTest 1 0 0 0 100% 0.017
FastqToFastaTest 1 0 0 0 100% 0.024
GWTCompileTest 1 0 0 0 100% 4.621
GWTTest 1 0 0 0 100% 19.581
UpgradeTest 1 0 0 0 100% 0.166
ImportTest 4 0 0 1 75% 6.049
PackTest 1 0 0 0 100% 0.106
ServerTest 3 0 0 0 100% 40.813
KeywordTest 3 0 0 0 100% 0.786
UTGBShellTest 2 0 0 0 100% 0.199

org.utgenome.format.gff3

Class Tests Errors Failures Skipped Success Rate Time
GFF3ReaderTest 1 0 0 0 100% 0.002

org.utgenome.gwt.utgb.server.bio

Class Tests Errors Failures Skipped Success Rate Time
CoordinateTest 1 0 0 0 100% 0.004
LocusBindingTest 1 0 0 0 100% 1.017

org.utgenome.gwt.widget.client

Class Tests Errors Failures Skipped Success Rate Time
UTGBWidgetTest 1 0 0 0 100% 0.002

Test Cases

[Summary] [Package List] [Test Cases]

TrackConfigurationTest

loadTest 0.013
testConvert 0.006

FastqReaderTest

reader 0.002

WIG2SilkTest

test 0

QSeqToFASTQTest

sample 0.04

SmithWatermanAlignerTest

align 0.009
softClip 0.002
alignUsingPackFile 0.001

SearchResultTest

parseTest 0.036

DatabaseFolderTest

testDatabaseFolder 0.002

Seq2FastqTest

convert 0.005

FastqToSilkReaderTest

convert 0

UTGBWidgetTest

dummyTest 0.001

ReadViewTest

testIsDescendantOf 0.023

FileResourceTest

findActionClasses 0.01

ReadDBBuilderTest

build 0.318
buildLarge 0.216

Sam2WigConverterTest

convert 0.011
convert2 2.377

BEDLexerTest

testLexer
+ [ Detail ]
 0.434
skipped

KeywordAliasReaderTest

read 0.005

CoordinateTest

testname 0.003

CompactFASTAIndexTest

load 0.212
toCytoBand 0.008

FASTADatabaseTest

testCreateDB 0.031

RequestDispatcherTest

testRemoveGWTModuleName 0.058
testFindActionPackages 0

IUPACTest

encode 0.022

CanonicalPropertiesTest

var2nat 0.009

OldViewXMLTest

load 0.118

KmerIntegerFactoryTest

factory 0.001

CompactACGTWriterTest

genTable 0.003
to2bitindex 0.001

CompactFASTAGeneratorTest

testGen 0.048
testGenTarGZ 0.188

ACGTEncoderTest

encode 0
toBase 0.001
encodeSeq 0

TrackDescriptionTest

beanTest 0.121

ReadSweeperTest

sweep 0.167

CodonTableTest

codon 0.024
toAA 0.001

FASTAPullParserTest

pullParsing 0.002
pullParsing2 0
readTarFile 0.037

SAMReaderTest

testRead 0.002

CIGARTest

parse 0.008
construct 0

WIG2SilkReaderTest

testGen 0.085

BED2SilkTest

test 0.028
intervalList 0.12
testForErroneousBED 0.033

BEDReadTest

strand 0.001

TrackViewTest

encode 0.001
loadSilk 0.029

FontPanelTest

testGetFontInfo 0.429

Blast2SilkTest

testReading 0.067

IntervalTreeTest

empty 0
query 0
query2 0
sweepBefore 0
sweepBefore2 0.001

LocusBindingTest

loadLocusSilk 1.016

FastqToBAMTest

convert 0.061
convertToBAM 0.028
convertSample 0.006
convertGZSample 0.008

SAM2SilkReaderTest

toSilkTest 0.056
bssSAM 0.176

JDBCServiceTest

testConnection 0.618

CompactFASTATest

sequence 0.083
sequenceOnMemory 0.085
chrM 0.101
chrMOnMemory 0.08

BAMReaderTest

testRead 0.049
queryTest 0.026

TrackWindowChainTest

chain 0.021

BrowserServiceImplTest

aligmentDataFormat 0.036
loadAlignmentJSON 0.042

BED2SilkReaderTest

testGen 0.318
testExon 0.024

PrioritySearchTreeTest

iterator 0.021
testRangeQuery 0.002
testRemove
+ [ Detail ]
 0.003
org.utgenome.gwt.utgb.client.canvas.PrioritySearchTree.remove(Ljava/lang/Object;II)V

GFF3ReaderTest

load 0.001

UTGBConfigTest

parseTest 0.021
toSilkTest 0.033

CompactACGTTest

iterator 0.008
constructor 0
reverseComplement 0
subsequence 0

KeywordDBTest

importBED 0.157
importTab 0.033
keywordSplit 0.001

IntervalTest

contains 0
constructor 0
intersect 0

FastqRenameTest

rename 0.005

Sam2WigTest

convert 0.866

MavenTest

testRunMaven 0.353
extractMaven 0.008

Illumina2FastqTest

fastq 0.006

QSeqToFastqTest

convert 0.016

FastqToFastaTest

convert 0.021

GWTCompileTest

runTest 4.619

GWTTest

testGWT 19.579

UpgradeTest

upgradeView 0.164

TomcatServerTest

start 1.272

ImportTest

importTest
+ [ Detail ]
 0
skipped
auto 0
importPaddedSAMReads 3.019
importSAM 3.02

PackTest

pack 0.104

ServerTest

compile 7.263
server 17.131
envSwitchTest 16.32

KeywordTest

testExecuteStringArray 0.491
testSAMKeyword 0.166
testBAMKeyword 0.126

UTGBShellTest

commandList 0
displayHelp 0.196

Failure Details

[Summary] [Package List] [Test Cases]


testLexer
skipped: skipped
testRemove
java.lang.NoSuchMethodError: org.utgenome.gwt.utgb.client.canvas.PrioritySearchTree.remove(Ljava/lang/Object;II)V
importTest
skipped: skipped